Detail information of GWHGAAEX010638/evm.TU.scaffold_305.17
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|386714222|ref|YP_006180545.1| | 1.00E-55 | MFS-type transporter [Halobacillus halophilus DSM 2266] |
| KOG | KOG0254 | 2.00E-147 | Predicted transporter (major facilitator superfamily) |
| nr | gi|672161172|ref|XP_008800390.1| | 0 | PREDICTED: sugar carrier protein C-like [Phoenix dactylifera] |
| Swissprot | tr|Q41144|STC_RICCO | 7.00E-150 | Sugar carrier protein C |
| trEMBL | tr|M0U362|M0U362_MUSAM | 1.00E-176 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P24550_001} |
| TAIR | AT1G11260 | 2.00E-147 | sugar transporter 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000316 | 261714 | 269973 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010638
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00083.23 | Sugar_tr | 7 | 341 | 2.00E-89 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.470 |
| SRR2545915 | Juvenile tuber | 7.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.680 |
| SRR5643514 | five period of Gastrodia elata | 11.710 | |
| SRR5643515 | five period of Gastrodia elata | 9.300 | |
| SRR5643524 | five period of Gastrodia elata | 9.090 | |
| SRR5643525 | five period of Gastrodia elata | 45.130 | |
| SRR5643528 | five period of Gastrodia elata | 37.250 | |
| SRR5643658 | five period of Gastrodia elata | 93.280 | |
| SRR5643659 | five period of Gastrodia elata | 9.780 | |
| SRR5643660 | five period of Gastrodia elata | 9.460 | |
| SRR5643661 | five period of Gastrodia elata | 8.880 | |
| SRR5643662 | five period of Gastrodia elata | 12.850 | |
| SRR5643663 | five period of Gastrodia elata | 20.150 | |
| SRR5643664 | five period of Gastrodia elata | 20.130 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 19.480 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.840 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.630 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 23.750 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 21.270 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 22.300 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.620 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.440 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.730 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.390 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.390 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.52 |
| Juven | Juvenile tuber | 23.61 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.97 | |
| Mother_Juven | Mother tuber of Juvenile | 14.00 |