Detail information of GWHGAAEX010645/evm.TU.scaffold_307.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1058 | 5.00E-123 | Vesicle coat complex COPI, beta subunit |
| nr | gi|695031573|ref|XP_009403308.1| | 3.67E-130 | PREDICTED: coatomer subunit beta-1-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q53PC7|COPB1_ORYSJ | 2.00E-131 | Coatomer subunit beta-1 |
| trEMBL | tr|W5CIH3|W5CIH3_WHEAT | 2.00E-136 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_3AS_0355A69E8.1} |
| TAIR | AT4G31480 | 5.00E-123 | Coatomer, beta subunit |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000299 | 9 | 6173 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010645
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07718.11 | Coatamer_beta_C | 24 | 163 | 1.10E-59 |
| PF14806.5 | Coatomer_b_Cpla | 168 | 211 | 5.90E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0016192 | Biological Process | vesicle-mediated transport |
| GO:0005198 | Molecular Function | structural molecule activity |
| GO:0030126 | Cellular Component | COPI vesicle coat |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 34.270 |
| SRR2545915 | Juvenile tuber | 38.290 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 64.300 |
| SRR5643514 | five period of Gastrodia elata | 55.510 | |
| SRR5643515 | five period of Gastrodia elata | 58.440 | |
| SRR5643524 | five period of Gastrodia elata | 59.920 | |
| SRR5643525 | five period of Gastrodia elata | 70.050 | |
| SRR5643528 | five period of Gastrodia elata | 52.830 | |
| SRR5643658 | five period of Gastrodia elata | 55.330 | |
| SRR5643659 | five period of Gastrodia elata | 54.240 | |
| SRR5643660 | five period of Gastrodia elata | 50.450 | |
| SRR5643661 | five period of Gastrodia elata | 43.330 | |
| SRR5643662 | five period of Gastrodia elata | 54.400 | |
| SRR5643663 | five period of Gastrodia elata | 60.070 | |
| SRR5643664 | five period of Gastrodia elata | 45.220 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 59.990 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 54.330 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 63.580 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 52.180 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 58.040 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 51.760 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 51.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 50.490 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 65.020 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 64.550 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 79.580 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 79.580 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 72.19 |
| Juven | Juvenile tuber | 79.83 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 97.64 | |
| Mother_Juven | Mother tuber of Juvenile | 84.65 |