Detail information of GWHGAAEX010646/evm.TU.scaffold_307.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG10580Vesicle coat complex COPI, beta subunit
nrgi|661885987|emb|CDP10604.1|0unnamed protein product [Coffea canephora]
Swissprottr|Q9SV20|COPB2_ARATH0Coatomer subunit beta-2
trEMBLtr|A0A068UQS2|A0A068UQS2_COFCA0Coatomer subunit beta {ECO:0000256|PIRNR:PIRNR005727}
TAIRAT4G314900Coatomer, beta subunit

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000029967338106-
Transcript Sequence

Network for GWHGAAEX010646

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01602.19Adaptin_N214572.60E-78
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0016192Biological Processvesicle-mediated transport
GO:0006886Biological Processintracellular protein transport
GO:0030117Cellular Componentmembrane coat

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.650
SRR2545915Juvenile tuber32.150
SRP108465SRR5643513five period of Gastrodia elata41.830
SRR5643514five period of Gastrodia elata47.270
SRR5643515five period of Gastrodia elata45.790
SRR5643524five period of Gastrodia elata50.070
SRR5643525five period of Gastrodia elata25.220
SRR5643528five period of Gastrodia elata29.830
SRR5643658five period of Gastrodia elata34.110
SRR5643659five period of Gastrodia elata46.320
SRR5643660five period of Gastrodia elata49.760
SRR5643661five period of Gastrodia elata41.290
SRR5643662five period of Gastrodia elata44.880
SRR5643663five period of Gastrodia elata46.790
SRR5643664five period of Gastrodia elata40.820
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_144.780
SRR6049655Rhizomagastrodiae_C368-T10_good_162.860
SRR6049656Rhizomagastrodiae_C368-T07_good_150.920
SRR6049657Rhizomagastrodiae_C368-T07_good_139.760
SRR6049658Rhizomagastrodiae_C368-T04_good_149.180
SRR6049659Rhizomagastrodiae_C368-T04_good_145.500
SRR6049660Rhizomagastrodiae_C368-T01_good_145.880
SRR6049661Rhizomagastrodiae_C368-T04_good_148.190
SRR6049662Rhizomagastrodiae_C368-T01_good_162.660
SRR6049663Rhizomagastrodiae_C368-T01_good_157.780
SRR6049664Rhizomagastrodiae_C368-T10_good_160.640
SRR6049665Rhizomagastrodiae_C368-T10_good_160.640
SRP279888GastroGastrodia elata tuber 31.96
JuvenJuvenile tuber46.34
Mother_GastroMother tuber of Gastrodia elata 36.92
Mother_JuvenMother tuber of Juvenile 46.01