Gene detail

Detail information of GWHGAAEX010647/evm.TU.scaffold_307.3

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|302865861\|ref\|YP_003834498.1\|	3.00E-07	ribonuclease III [Micromonospora aurantiaca ATCC 27029]
nr	gi\|695022738\|ref\|XP_009398510.1\|	2.74E-77	PREDICTED: double-stranded RNA-binding protein 1-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q5N8Z0\|DRB1_ORYSJ	1.00E-60	Double-stranded RNA-binding protein 1
trEMBL	tr\|A0A067EVJ4\|A0A067EVJ4_CITSI	2.00E-67	Uncharacterized protein {ECO:0000313\|EMBL:KDO54956.1} (Fragment)
TAIR	AT3G26932	1.00E-33	dsRNA-binding protein 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000299	48937	69785	-

Transcript Sequence
>GWHTAAEX010647 GTTGGCGATCGTATTTGAACTTGAACTCGGCGCCATGCACGAGATTGGAGAACTTCACTTCTGCGAGATTGTATCAACAGGAATTTCCCTTTCGGTTTCAGAGTTTTGAACGCAGGCGGAGTAGCAGAGTAAGGGCAATAGGGCAGGTTTATTGGGGTGAAATGTCGACGACGACGGGGTGCCTCCGAAGCTTTTGGCGGGATTGACGAATGGCTACCTTTTGCAGCCCTCCGTCACGGGCACGGTTATGCGATGCCCAACGGGAGATTTAGGGGTTTTTTTTTTGCGATTTTAGCGGAGTTAGCGAGGAATCCGTAGGAGCGGCTGTAAAATCGCATCCATGTGGAAAATGCCACGTCTTATGTCACATCATTGAGTATTTTTGAGTGCCATATGAGACATGAGACGGTAGGGGAGCATTCAATAAAAAAATATTTTACGTACATCTTGATCGTAATCGGTAATTCTAGGAGTGAGGAGTAGGAGAAGAGGCGCGGAGGATGCATAAGAATAGATTACAAGAGCTTTGCCACAAGCGAATGTGGCCTTTGCCCTCTTACACTAATAGCCGCGATGGCCCCGATCACAATCCCCGATTCCGTGCCTCCGTCGTTGTTAATGGCCAAACTTTCGATGCCCCAAGTTTCTCCAAATCTGTTAAAGAGGCTCAGAACAAGGTTGCTGAGGTCGCCCTTGACCACCTATCTTCCATCGCCCCGGTCTCCGCAGTTTCCCCCACTTTAGCCATTAATACCGAGGTTCAAGTTTCATACAAGGCTCAGCTACAACATTATGTGCAAAAAAGAAATATCGCTTTTCTAAAATATGACTCAGTTTGCGAGGGTTCTGCTCATGCACTTCGATTTAAAGCAAGGGTTACAATTGATGAACAAACCTTTGATAGTTCAGACTACTTCAACACTGTAAGAGAAGCTGAACATTCTGCTGCAAAGGTTGCTTTAATGTCATTGCCTCTTGAAGATAATCATCAGGATGAACCCAATTTTTACAAGAATCTCTTGCAAGAGTTAGTTCAGAAAACTGGTCTATCTTTGCCATCATACAGCACCCTATTTAATGGCGAATCTCATATGCCGATTTTTACGTGCACTATAACATTAAATGGTGAAAGATATGTAGGAGAATCTGCAAGGACAAAAAAACAGGCAGAGATGAATGCTGCAAAAGTAGCATGGCATCATGCCAAAGAACAAATCCATTCCCATTCTATAAAAGTTACTCGTGAAATGGCAATTGGTAACCTGGAACAGCCAAAAATTGATTCTATGCTACCCTTGTCTTCAAAGTCGGAGGAAAGGAATCAAACTGCTAAAGGCCCTTTGATGAAATGGCAAGTAAAGCGTGAGAATTCTTCAGTTTCTTTTAAAAATCAACAGGAAACCATTAACTTCATGGATGCACAAAATTTTAACTCTATTCCGGTATCTACTCTAAAGATTAATGAAGATTACCAGTCTAAAGAGCAAAAAGGCCTTTCAGCCCCAATCTCAAATGAGAAGATTGAAGACAAGCTAGCTAATGGCGGAGAAGTAGAAGAAGACAACAAAACTATTTCCGCAGGCATAGCCATGAATGAAGCTGAAGATGCAATCCTTTCCTTTGGCTTCCCTAAGATGAAGCTGGATTCCAGCGGAATTGTAGGAGCGGACAACAACTCACATAGGAACAGTTCCAGTGACCTTGTAGATGATCTGAACCTGTCTCTTCTGAAGCTGGGCTTTGATGTCAAGATAGAAGAAGAAGAAGAAGAAGAAGAAGAAACAATTAAAGCTGATGCATTGTCAGAGGATGTGGATACTGTCAAAGGCATTGCTCCCTCTTTGCTTTGTAACAGAGTTCTAGTGTATCCTCGCAAGCCTGACATGGTTTTACCTGCCGGGGCAACACTTCTGCCTTTCAGTGATGGGGCATGGGTAGCCGTTAGCCTTGATTTCTCCGAGCATGAGGATAATCTGCTAACTATGTTATGAGGGACACACTTCTGCCATTCAGTGATGGGACTTGGGTAGCCGTTAGCCTCAATTTTTCCGACCACAAGGATAATCTGCTATGTTATGAGAACCTTCTATGCATTTATTTGTTTATATTCTGTTTGAATTTTGAAGGGGTGTTCTCAGGCTGCAGGTTTTCTTGGGTTGCTACTCAGTTACTATGTTATTTTTTTCATGCTGTAGTGCTGATGGTATCAGAACTGCCTTCTTCGTAGCATTGCCTCCCTTACTGTTTACAAAATTCTTACAGGTGGTGTGTATAATGAATCTGATAAGAATTTGGGATAATTGCTGATGTAACATATAAATTTAATTATTTATATGTAAATCTTAGTTACATTTGATAAACTTAAATACCATAATGTTTTTAGTAGATCTGAGCATCTTCGTGG

Network for GWHGAAEX010647

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00035.25	dsrm	3	68	1.00E-14
PF00035.25	dsrm	91	154	2.70E-08
PF00035.25	dsrm	170	233	2.30E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.260
SRP064423	SRR2545915	Juvenile tuber	2.290
SRP108465	SRR5643513	five period of Gastrodia elata	2.470
	SRR5643514	five period of Gastrodia elata	4.190
	SRR5643515	five period of Gastrodia elata	2.510
	SRR5643524	five period of Gastrodia elata	4.350
	SRR5643525	five period of Gastrodia elata	2.730
	SRR5643528	five period of Gastrodia elata	2.200
	SRR5643658	five period of Gastrodia elata	2.580
	SRR5643659	five period of Gastrodia elata	3.370
	SRR5643660	five period of Gastrodia elata	3.660
	SRR5643661	five period of Gastrodia elata	3.230
	SRR5643662	five period of Gastrodia elata	2.960
	SRR5643663	five period of Gastrodia elata	3.260
	SRR5643664	five period of Gastrodia elata	2.970
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.570
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.400
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.440
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.440
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.460
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.030
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.750
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.030
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.270
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.830
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.150
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.150
SRP279888	Gastro	Gastrodia elata tuber	3.62
	Juven	Juvenile tuber	2.21
	Mother_Gastro	Mother tuber of Gastrodia elata	2.18
	Mother_Juven	Mother tuber of Juvenile	1.70