Detail information of GWHGAAEX010671/evm.TU.scaffold_31.4
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-70 | FOG: PPR repeat |
| nr | gi|743889107|ref|XP_010910774.1| | 1.36E-148 | PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Elaeis guineensis] |
| Swissprot | tr|Q9LKU8|PP401_ARATH | 3.00E-71 | Pentatricopeptide repeat-containing protein At5g28460 |
| trEMBL | tr|C5Z7W6|C5Z7W6_SORBI | 2.00E-133 | Putative uncharacterized protein Sb10g008940 {ECO:0000313|EMBL:EER89525.1} |
| trEMBL | tr|C5Z7W6|C5Z7W6_SORBI | 4.00E-21 | Putative uncharacterized protein Sb10g008940 {ECO:0000313|EMBL:EER89525.1} |
| TAIR | AT5G28460 | 1.00E-70 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000028 | 142469 | 144993 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010671
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12854.6 | PPR_1 | 46 | 76 | 3.80E-11 |
| PF13041.5 | PPR_2 | 88 | 134 | 4.80E-13 |
| PF01535.19 | PPR | 161 | 190 | 9.50E-08 |
| PF13041.5 | PPR_2 | 192 | 241 | 1.80E-17 |
| PF13041.5 | PPR_2 | 262 | 310 | 1.20E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.560 |
| SRR2545915 | Juvenile tuber | 2.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.490 |
| SRR5643514 | five period of Gastrodia elata | 2.460 | |
| SRR5643515 | five period of Gastrodia elata | 2.290 | |
| SRR5643524 | five period of Gastrodia elata | 2.100 | |
| SRR5643525 | five period of Gastrodia elata | 1.640 | |
| SRR5643528 | five period of Gastrodia elata | 1.240 | |
| SRR5643658 | five period of Gastrodia elata | 1.920 | |
| SRR5643659 | five period of Gastrodia elata | 3.930 | |
| SRR5643660 | five period of Gastrodia elata | 3.250 | |
| SRR5643661 | five period of Gastrodia elata | 3.120 | |
| SRR5643662 | five period of Gastrodia elata | 4.360 | |
| SRR5643663 | five period of Gastrodia elata | 3.250 | |
| SRR5643664 | five period of Gastrodia elata | 3.220 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.350 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.470 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.090 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.830 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.480 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.140 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.270 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.680 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.920 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.740 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.450 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.450 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.06 |
| Juven | Juvenile tuber | 2.31 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.82 | |
| Mother_Juven | Mother tuber of Juvenile | 0.83 |