Gene detail

Detail information of GWHGAAEX010684/evm.TU.scaffold_31.32

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0446	Vacuolar sorting protein VPS1, dynamin, and related proteins
nr	gi\|743756297\|ref\|XP_010916099.1\|	PREDICTED: dynamin-related protein 5A [Elaeis guineensis]
Swissprot	tr\|F4HPR5\|DRP5A_ARATH	Dynamin-related protein 5A
trEMBL	tr\|M0S6I9\|M0S6I9_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P09480_001}
TAIR	AT1G53140	Dynamin related protein 5A

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000028	2553683	2558281	-

Transcript Sequence
>GWHTAAEX010684 GTGCGCGCTCAGGTCTACTCATCCTCCGGTCAAATGGCGGCCAACGGTCTGACCACCAGCACCCCTATCAAAACCCCAAACCCTAAAACCCACCCTGCCGCCGCAAGGCGGCCTGCACCTTCGATCAACACTTCCAACGTAGATTCTTCCACGCAGACTGCCGATTTCAAGTCCAGGTTCGAAGCATACAACCGGCTTCAGGCTACAGCCTTCGCCTTCGGCGAAAAGCTCCCGATTCCAGAGATTGTTGCTGTCGGCGGCCAATCCGATGGCAAGAGCTCACTCCTCGAGGCCCTTCTCGGCTTCCGCTTCAACGTCCGCGAGGTTGAGATGGGCACGCGCCGCCCTCTCGTCCTTCAGATGATTCACGATCCCTCCTCCCTCGAGCCACGATGCCGCTTCCAGGATGAAGAATCGGAGGAGTACGGAAGTCCGGTGGTTTTGGGTACGGCGATCGCGGACCTAATTCGTTCCCGCACTGATGCGCATCTGAAGAAGATCCAGGCTGCGGTTTCCTCCAAGCCTATTGTTATGAGAGCCGAGTATTCTCACTGCCCTAATCTCACCATCATCGACACTCCTGGTTTCATTCTAAAGGCAAAGAAAGATGAGCCAGAAAATACGCCCGATGAGATCTTATCAATGGTGAAATCTTTGGCCAGCCCGCCACACCGGCTTCTCTTATTCCTCCAACAGAGCAGCGTTGAGTGGTGCTCCTCCCTGTGGTTAGATGCTATTCGAGAAATTGATCCCACTTTCAAGAGAACTATAATTGTTGTGTCCAAATTTGACAACCGCCTGAAGGAATTCAGTGAGAGCTGGGAAGTTGATCGTTATCTGAGTGCTAGTGGCTATCTTGGAGAGAACACCCACCCCTTTTTTGTGGCACTTCCTAAGGATAGGGGTATTATATCTAATGATGAATTTCGTAGGCAGATTTCTCAAGTGGACCTCGACATCCTACATCATCTGCGTGACAATATAAAAGGGGGCTTCAATGAAGAGAAGTTTGAACCGTTTATTGGTTTTGGCTGTCTCAGAAAATTCCTGGAAAGCGAACTTCAGAAGAGATACAAGGAAGCTGCCCCAGCAACACTGGCATTGCTTGAACAGCGTTGTAGTGAACTCTCTCTTGAGCTGGGTCGAATAGACTACAAGTTACAGGCCACTTCTGATATTTCTCTGCTTCGGAAAGCTGGAATGCTTCATGCAGCCTCTATATGCACTCATGTGATTGCATTAATAGACGGTGCAGCTGATCCTGCGCCTGAGCAATGGGGGAAATCAACAGCTGAAGAACAGCAAGAGAGTGGTTTCGGGAGTTGGCCTGGTGTCACTGCTGTTGTAAAACCGCCAAACTATATTCTTAAACTTTATGGTGGTGCAGCATTTGAAAGGGTAATGCATGAGTTTCGTTGTGCTTCATACTCACTTGAATGCCCGCCAGTTTCAAGAGAGAAGGTAGCAAATATTTTACTTGCCCATGCGAGCAGAGGAGGCACTGGCGGATTAGTGGAGGCAGCTGCCGAGATAGCTCGTGCAGCAGCAAGGGCTTGGTTCGCCCCTATTCTAGATACCGCCTGTGACCGTCTTGCTTTTGTGCTGAAGAGTCTCTTTGATTTGGCAATAGAGCGTAATCGCAGCCATGATTTATACTATTGGCAAAATGGGAATGTGGATGGATATATTGGATTTCATGCTGCTCTAAGACGCTCTTACAATAGCTTTATTAATGATCTGTCTAAGCATTGCAAGCAACTTGTGCGACATCACCTGGATTCAGTAACTAGCACATATTCTCAAGTCTGCTATGAACCTGATTTCACAGGTGGGATTGGCTCTGGTTCAAATTCATACTCTAGATGCACTCAGATTCAAAGCATTTCATGCTTCCTTGATTTGTCAGACTCCGCAACAATACAAGAGCAGATGGATCAGGAAAATGTACTGCCTAAAAATCAGCATAACACAACTCCTGGAAAAAGAATGGAGTCTAAAGAGATGCTAAAAGAGAGCCAAATGACAATTCCCGAGACACCTTCTCCGGATATGCCAAGTGATGCTGTTTTAGGTATTAGAAAGAAGGAAAATGGGAACTGTTTGGACATTGGCGGAAGGAAACGCCAGGCAAGAACTGTAACCAGTGGAAGGGTTTCAGATGTGAGCAGGAATCAGATTTCTGGCTTTGGTGATATAGCTAAATCCGGGTCCTCCTATGTTGATATTTGCTCGTTAGCGGCTCAACATTTTGCACGAATTCGTGAGGTCCTCATTGAGAGAAGCGTTTCCTCCGCCTTGAATTCTGGTTTTCTCACTCCCTGCCGAGAGCGGTTGATGGTGGCGATTGGTTTGGAGCTATTTGCCGTGGCAGATGAAAAATTTATGGATATGTTTGTTGCACCTGGTGCAATTGATGCCCTCCAAAGTGAAAGGCAATCCCTTCAAAGGAAGGAAAAGATCTTACAGTCTTGTTTGAACGAGTTCAAAAGCATAGCTCGGGCTTTATGATAAAAAAGGAATCTCTCTCAAATTGCATAGTTTCAGGCCGTTTAAGAATGCTCTAATACAATGTTAGTGCTTCGGGTAAACAATTGAATATGGCTTGCATATTCTCTGCTGAAAATTTTATGGACATTCTTTTGCCCATTTTAATTTAAGATGTCTCTCAGTATTGTTCCTGCTACATTTTTTTACTCAATGAGATTTGTTGAACAAGTATGTGCTTCATACATTTCAT

Network for GWHGAAEX010684

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00350.22	Dynamin_N	71	251	9.90E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005525	Molecular Function	GTP binding
GO:0003924	Molecular Function	GTPase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.160
SRP064423	SRR2545915	Juvenile tuber	0.030
SRP108465	SRR5643513	five period of Gastrodia elata	0.750
	SRR5643514	five period of Gastrodia elata	1.200
	SRR5643515	five period of Gastrodia elata	0.620
	SRR5643524	five period of Gastrodia elata	0.900
	SRR5643525	five period of Gastrodia elata	0.210
	SRR5643528	five period of Gastrodia elata	0.200
	SRR5643658	five period of Gastrodia elata	0.150
	SRR5643659	five period of Gastrodia elata	0.250
	SRR5643660	five period of Gastrodia elata	0.200
	SRR5643661	five period of Gastrodia elata	0.230
	SRR5643662	five period of Gastrodia elata	0.120
	SRR5643663	five period of Gastrodia elata	0.060
	SRR5643664	five period of Gastrodia elata	0.140
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.400
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.890
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.830
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.510
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.300
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.190
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.180
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.660
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.020
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.760
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.870
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.870
SRP279888	Gastro	Gastrodia elata tuber	0.13
	Juven	Juvenile tuber	0.08
	Mother_Gastro	Mother tuber of Gastrodia elata	0.58
	Mother_Juven	Mother tuber of Juvenile	1.07