Detail information of GWHGAAEX010686/evm.TU.scaffold_31.36
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0627 | 3.00E-78 | Heat shock transcription factor |
| nr | gi|743756398|ref|XP_010916598.1| | 4.04E-140 | PREDICTED: heat stress transcription factor A-4b-like [Elaeis guineensis] |
| Swissprot | tr|Q94J16|HFA4B_ORYSJ | 2.00E-106 | Heat stress transcription factor A-4b |
| trEMBL | tr|B9S8F1|B9S8F1_RICCO | 9.00E-114 | Heat shock factor protein, putative {ECO:0000313|EMBL:EEF40128.1} |
| TAIR | AT5G45710 | 3.00E-78 | winged-helix DNA-binding transcription factor family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000028 | 2937852 | 2948997 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010686
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00447.16 | HSF_DNA-bind | 14 | 103 | 9.50E-30 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HSF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 37.840 |
| SRR2545915 | Juvenile tuber | 38.640 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 23.500 |
| SRR5643514 | five period of Gastrodia elata | 17.150 | |
| SRR5643515 | five period of Gastrodia elata | 19.010 | |
| SRR5643524 | five period of Gastrodia elata | 22.790 | |
| SRR5643525 | five period of Gastrodia elata | 19.510 | |
| SRR5643528 | five period of Gastrodia elata | 25.410 | |
| SRR5643658 | five period of Gastrodia elata | 18.230 | |
| SRR5643659 | five period of Gastrodia elata | 20.600 | |
| SRR5643660 | five period of Gastrodia elata | 21.700 | |
| SRR5643661 | five period of Gastrodia elata | 22.790 | |
| SRR5643662 | five period of Gastrodia elata | 18.300 | |
| SRR5643663 | five period of Gastrodia elata | 16.370 | |
| SRR5643664 | five period of Gastrodia elata | 19.890 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 19.760 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.330 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.740 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 22.790 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.310 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 22.510 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.370 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 21.040 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.250 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.420 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.460 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.460 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.06 |
| Juven | Juvenile tuber | 33.89 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 27.52 | |
| Mother_Juven | Mother tuber of Juvenile | 30.46 |