Detail information of GWHGAAEX010696/evm.TU.scaffold_31.53


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|18313897|ref|NP_560564.1|2.00E-10U/G & T/G mismatch specific glycosylase (PA-MIG) [Pyrobaculum aerophilum str. IM2]
nrgi|695010653|ref|XP_009392005.1|6.16E-60PREDICTED: methyl-CpG-binding domain protein 4 [Musa acuminata subsp. malaccensis]
trEMBLtr|M0SE53|M0SE53_MUSAM9.00E-63Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P12860_001}
TAIRAT3G079305.00E-54DNA glycosylase superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002838105443824671+
Transcript Sequence

Network for GWHGAAEX010696

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00730.24HhH-GPD2904033.20E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10801MBD4 Base excision repair map03410

Gene Ontology

GO term OntologyName
GO:0006281Biological ProcessDNA repair
GO:0006284Biological Processbase-excision repair
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms2.120
SRR2545915Juvenile tuber2.890
SRP108465SRR5643513five period of Gastrodia elata2.090
SRR5643514five period of Gastrodia elata2.810
SRR5643515five period of Gastrodia elata2.140
SRR5643524five period of Gastrodia elata2.900
SRR5643525five period of Gastrodia elata0.450
SRR5643528five period of Gastrodia elata0.210
SRR5643658five period of Gastrodia elata0.600
SRR5643659five period of Gastrodia elata0.770
SRR5643660five period of Gastrodia elata0.560
SRR5643661five period of Gastrodia elata0.520
SRR5643662five period of Gastrodia elata1.070
SRR5643663five period of Gastrodia elata0.820
SRR5643664five period of Gastrodia elata1.470
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.630
SRR6049655Rhizomagastrodiae_C368-T10_good_11.090
SRR6049656Rhizomagastrodiae_C368-T07_good_11.110
SRR6049657Rhizomagastrodiae_C368-T07_good_10.710
SRR6049658Rhizomagastrodiae_C368-T04_good_10.830
SRR6049659Rhizomagastrodiae_C368-T04_good_10.670
SRR6049660Rhizomagastrodiae_C368-T01_good_11.180
SRR6049661Rhizomagastrodiae_C368-T04_good_11.450
SRR6049662Rhizomagastrodiae_C368-T01_good_11.090
SRR6049663Rhizomagastrodiae_C368-T01_good_10.800
SRR6049664Rhizomagastrodiae_C368-T10_good_11.100
SRR6049665Rhizomagastrodiae_C368-T10_good_11.100
SRP279888GastroGastrodia elata tuber 0.79
JuvenJuvenile tuber0.89
Mother_GastroMother tuber of Gastrodia elata 0.11
Mother_JuvenMother tuber of Juvenile 0.76