Gene detail

Detail information of GWHGAAEX010701/evm.TU.scaffold_31.66

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1912	WD40 repeat protein
nr	gi\|672178198\|ref\|XP_008809224.1\|	PREDICTED: WD repeat-containing protein 11 isoform X1 [Phoenix dactylifera]
trEMBL	tr\|M0RX94\|M0RX94_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P05360_001}
TAIR	AT3G33530	Transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000028	4382628	4479017	-

Transcript Sequence
>GWHTAAEX010701 CCTGGCCCTGCGAACCGAAGCAATGGCGGCGCCGCAGACTGCAGCCTCACCGGACTTTTTGCCTATGGCGCGGGTAGCTCCATCGTGGTCGTCGACCCCAGGTCCATTCAGCTCGTATGCGTCCTTCCCATGCCTTCCCCTTCATCTCAATCCCCCGCCTTCACATCAACTCTTTCTTCTGCCCTTGCCCTTGCCCCCTTCGTCACCTCCGTCCGGTGGAGCTCCCAACCCGTTTCCCGCGAGCTTTCTGTCCACGATGACCTGTCCAACTCACACCTCCGCCTAGCTGCCGGGGATCGCCAGGGCCGCATCGCTATCTGGGATTTACGATCTCGCTCGATCGTCCTATGGCTTGAGCTCCACAACTTATCTCATGGAGACTGCCCAAAGCTGGGTATCCAAGATCTCTGCTGGGTCAAGTCGGAATCTTGGCTCATCGCTGCCATTCATGGGCCCTCTCTCCTCGTTCTATGGAATGCAGCTTCTGGTCGCTGCCTCTGGAAGTACGACACAACACCGGAGTATCTTGTGTGCATTCGCCGCGACCCATTTGACTGGAGGCATTTCTGCGTGCTCGGCCTTCGCGGATTTTTGCTCTCGGCCATTGTTCAAGGGGAAGACAACGGCGAGGTTTCTCTTCAGGAGCTTCAGATTCCTGGATTTCGGGACTCTGTCGATCTTCCGAAGAATGAAAGGGAGTTCTCCGCGGGGTTAACAGATCCAGCACTTGCAGCCTTCCCCCTGTTCTATGTGAGAATGTGTTTCTCTCCGAGGTGGAGGCACATTGTCATGGTGACATCCCCAAAGGAGCTCATAGTGTTCGATCTTCATTATAGGGCATCTTTGTCCTCTGCTCCGTTACCTCGTGGGTGCAGCAAGTTCATGGATCTGCTGCCCGATCCGGACGTTGATCTTCTCTATTGTGTTCATCTGGATGGGAAACTCAGTATATGGAAACGCAAAGAAGGAGAACAGGTGCATATGCTACATACAATAGAAGAATTAATGCCCTCCATTGGCATTTCCATTCCTTTGCCGTCAATTCTTGCTGTAGTACTCTGCCAATCTGATTCTACTTTTCAGAATGTTGGAAGGCTTTGTGCCGACACATGTTACACAAATTCTCCAATTGTCAACCCTTCTCCCTCTTTAAATTTATTAGGTGGCATGAATCTTGATGCAAAGACGACATTGATCTCCATCTCTGATGATGGTAAAATCTGGAATTGGCTTCTGACTTCTGGAAAAGCAAGAGATATTGGGCTGGTTTCCTTGAATATTAACAGTGTCGTTGATGTTGGAGAAGGGTCTCATTTGGATGCACAATCTGGAACAGCTAGTGATTATTCTACTATGTCACAACAAAATATAGTCAAAGAATCAAAGAATATTAACTCTACTAATCTGTTGAGGACTAGCATTGACTCCATATCTTCTACAAAGATTGACTTGGTTGGCCAACTTCATCTTATTTCTTCTACTGTGACAGCTCTGTCGGTGCCTTCGCCTTCTTTACTTGGCACTTTGGCTCGAGGAGGAAACAGTCCCGCGCCAGCTGTGATACTTGTTGCTTTAGGAACACAAAGTGGAACTATTGAGGTCATTGATGTTTCAGCTAACGCAGTTGCTGCTAGCTTTTCTGTTCACAGTGGCATTATTAAAGGATTGAGATGGCTTGGAAATTCTCGCCTTGTATCCTTTTCATTCAGTCAGGCAAATGACAAAACAGGTGGTTATGTTAATAAACTAGTTGTTACCTGCCTTAGGAGTGGACTTAACCGTGCATTCAGAGTTCATCAAAAGCCAGAGCGTGCTCCTATAAGAGCTTTGAAAGCTTCTTCATCAGGAAGGTACCTTCTTATACTGTTTCGTGATGCTCCAGTTGAAGTGTGGGCTATGACGAAGACTCCTATCATGATCAGATCATTAGCTCTTCCATTTACAGTAATGGAGTGGACTCTACCCTATGCGCCTCGTCCACCCAGGCAGTCTTCATATTCTTCTGAGTTACCCACTACGACTCCAGCAACAAATGCATCTTTCAGTGAATCAAAGATTTCAAGCACTGATAATGGTAGTGATGACTTATCTGAGAGTTTTGCTTTTGCGTTAGTCAATGGTGCCCTTGGAGTATTTGAAGTTCATGGAAGGAGGATACGGGATTTTAGGCCGAAATGGCCTTCTTCATCATTTGTTTCTTCTGATGGGCTGATAACTGCAATGGCATATCGCCTTCCACATGTGGTATTGGGGGACAGATCTGGCAACATACGTTGGTGGGATGTGACTACCGGCCTTTCTTCTTCGTTCAATACTCATAGGGATGGAGTTCGAAGGATAAAATTCTCCCCTGTTGGTCCTGGGGATCATAGCAGGGGACGTATTGCTGTGCTTTTCTATGATAACACTTTCTCAATCTTTGATCTTGACACATCAGATCCATTAGCCAATGCACTTCTGCAGCCACAATCTCCTGGTACTCTTGTTCTTGAACTTGATTGGCTACCAATGAGAACCAAAGGAAATGAACCATTAATATTATGTATTGCTGGTGCTGATAGCAGCTTTCGTCTTGTAGAAGTTAATGTCAATGATGCCAAAGCTATTTCAAGCTCCAGGGGCATGTTTCTGAAAGAGAGATTTCGACCAATGCCACTGTGCTTACCTTTTTTATTTCCCATGCCTCATGCCTTGGCACTACGTATGATTATTCAATCAGGTGTAAAACCTTCATGGTTCGGTTTGTTTGATGCTTACATGGATACAGCACAGCTGGATGTTCCTGATCCTGAACCAACGTCATCTGGAGATCTTCGTGGTTACATTATTGAGTCACCTTTTCCTTCTGTTGGTGATTCAGTGGTGCCTGAATTGCTATTGAAGGTCTTAGAACCATATCGGAGAGAGGGTTGCATACTTGATGGTGAGCGAGTTCGGTTATATGCTTCACTAGCAAATAAAGGTTTTGCTGCAAGGTCTGCGTTTGCTGCTGCACTCTTTGGAGAATTTTCAGAGGCCCTTTTCTGGATACAGCTGCCTCATGCTCTTTCCCATGCAGTGAAGAAATCAGAGAAGAAATCTTCCCATGAAGCACCACAGTCAGAATCATTATCTGAGACTGAGAGTAAAGCGATGCTAACTAGAATAACTTCCAGGGAAAAATCTGCTTCGGAGAAGAGGAGAAAAAGTATCATGAAATTTGGCCAACTTAATTTGATGGCCTTTGAGCAAGAGGAATTGTGGGCAAATGCAAATGAGCGAATACCCTGGCATGAGAAGCTTGAAGGTGAAGAAGCAATTCAGAAGCAAGCCCATGAGCTTATCTCCATTGGAGATTTGGAAGGCGCCGTTGCTTTGTTACTCTCAACCCCTCCAGAAGGATCTAATTTCTATTTAAATGCTCTGCGTGCTGTAGCACTTTCTTCCGCTGTCTCAAAATCTTTGCATGAGCTTGCTGTCAAGGTTGTTGCTGCCAATATGGTTAGGACTGACAAATCGCTGTCTGGAACTCATCTTCTCTGTGCTGTTGGCAGGCACCAGGAAGCTTGTTCTCAGTTACAAGATGCTGGATGCTGGGTAGATGCTGCAACTCTAGCTGCTACTCATTTGCATGGATTAGACTATGCAAGGGTGTTGCTGAGATGGGCTGACCATGTACTCCATAATGAGCATAACATGTGGAGGGCTTTGATTCTGTACGTTGCGGCTGGAGCTTTGCCCGAAGCATTCGCAGCGCTCCGCGACGCGAAGCTGCCGGACACCGCCGCCATGTTCTTGGTTGCCTGCCACGAGATATACACAAGAATGCGCCCCGAATTGCAGTCGCCCAATGAACCGTCGGACGGCAAGAAGAGGTTCGTCCTTCCCTGCAAGAACATGGAGGACGACGATGATATTTATGCGGTCAGCGAGTTTTACGGCGAGTACCAGAGGAAGCTCGTCCACCTTTGCATGGACTCCATGCCGTTCTTTGGCTGAACTTTTGAATGCCTCTAAAAATGGCAAATGCTGCCGCAAATGTTTTGATACACTTGTTTTATTCTTTTTTAAAGGAAGGAGAAAAAGACGTGACAAAGATCATTGGATATTGATTGCGTTGCACAACCACAGTTGCTTCTGATAATAAAACATGCCATTTCATATTTGTTTCCGTGAGTGGCATTCTTCACTCTTTTGTAAAGTCTCATTTAAGACATTGGTTTTCTAGATCTGCAGGGACATTTACCTAGCTTCATTGCACAATTATGGCAAATTTTACATTTAAACATTCACAACTTTTTATAAAATTCTCTCAAATTATGC

Network for GWHGAAEX010701

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX010701
PGPANRSNGGAADCSLTGLFAYGAGSSIVVVDPRSIQLVCVLPMPSPSSQSPAFTSTLSSALALAPFVTSVRWSSQPVSRELSVHDDLSNSHLRLAAGDRQGRIAIWDLRSRSIVLWLELHNLSHGDCPKLGIQDLCWVKSESWLIAAIHGPSLLVLWNAASGRCLWKYDTTPEYLVCIRRDPFDWRHFCVLGLRGFLLSAIVQGEDNGEVSLQELQIPGFRDSVDLPKNEREFSAGLTDPALAAFPLFYVRMCFSPRWRHIVMVTSPKELIVFDLHYRASLSSAPLPRGCSKFMDLLPDPDVDLLYCVHLDGKLSIWKRKEGEQVHMLHTIEELMPSIGISIPLPSILAVVLCQSDSTFQNVGRLCADTCYTNSPIVNPSPSLNLLGGMNLDAKTTLISISDDGKIWNWLLTSGKARDIGLVSLNINSVVDVGEGSHLDAQSGTASDYSTMSQQNIVKESKNINSTNLLRTSIDSISSTKIDLVGQLHLISSTVTALSVPSPSLLGTLARGGNSPAPAVILVALGTQSGTIEVIDVSANAVAASFSVHSGIIKGLRWLGNSRLVSFSFSQANDKTGGYVNKLVVTCLRSGLNRAFRVHQKPERAPIRALKASSSGRYLLILFRDAPVEVWAMTKTPIMIRSLALPFTVMEWTLPYAPRPPRQSSYSSELPTTTPATNASFSESKISSTDNGSDDLSESFAFALVNGALGVFEVHGRRIRDFRPKWPSSSFVSSDGLITAMAYRLPHVVLGDRSGNIRWWDVTTGLSSSFNTHRDGVRRIKFSPVGPGDHSRGRIAVLFYDNTFSIFDLDTSDPLANALLQPQSPGTLVLELDWLPMRTKGNEPLILCIAGADSSFRLVEVNVNDAKAISSSRGMFLKERFRPMPLCLPFLFPMPHALALRMIIQSGVKPSWFGLFDAYMDTAQLDVPDPEPTSSGDLRGYIIESPFPSVGDSVVPELLLKVLEPYRREGCILDGERVRLYASLANKGFAARSAFAAALFGEFSEALFWIQLPHALSHAVKKSEKKSSHEAPQSESLSETESKAMLTRITSREKSASEKRRKSIMKFGQLNLMAFEQEELWANANERIPWHEKLEGEEAIQKQAHELISIGDLEGAVALLLSTPPEGSNFYLNALRAVALSSAVSKSLHELAVKVVAANMVRTDKSLSGTHLLCAVGRHQEACSQLQDAGCWVDAATLAATHLHGLDYARVLLRWADHVLHNEHNMWRALILYVAAGALPEAFAALRDAKLPDTAAMFLVACHEIYTRMRPELQSPNEPSDGKKRFVLPCKNMEDDDDIYAVSEFYGEYQRKLVHLCMDSMPFFG

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	29.110
SRP064423	SRR2545915	Juvenile tuber	16.240
SRP108465	SRR5643513	five period of Gastrodia elata	13.030
	SRR5643514	five period of Gastrodia elata	13.430
	SRR5643515	five period of Gastrodia elata	12.360
	SRR5643524	five period of Gastrodia elata	14.260
	SRR5643525	five period of Gastrodia elata	9.420
	SRR5643528	five period of Gastrodia elata	8.750
	SRR5643658	five period of Gastrodia elata	10.470
	SRR5643659	five period of Gastrodia elata	9.240
	SRR5643660	five period of Gastrodia elata	10.530
	SRR5643661	five period of Gastrodia elata	9.340
	SRR5643662	five period of Gastrodia elata	10.030
	SRR5643663	five period of Gastrodia elata	10.270
	SRR5643664	five period of Gastrodia elata	7.950
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	20.250
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	15.540
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	16.840
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	20.560
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	16.270
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	17.310
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	18.580
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	18.370
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.650
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.730
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.640
SRP279888	Gastro	Gastrodia elata tuber	11.78
	Juven	Juvenile tuber	22.11
	Mother_Gastro	Mother tuber of Gastrodia elata	12.33
	Mother_Juven	Mother tuber of Juvenile	16.03