Detail information of GWHGAAEX010704/evm.TU.scaffold_31.72


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|385805754|ref|YP_005842152.1|1.00E-58proteasome subunit Alpha [Fervidicoccus fontis Kam940]
KOGKOG01812.00E-15520S proteasome, regulatory subunit alpha type PSMA2/PRE8
nrgi|731356285|ref|XP_010689592.1|6.67E-160PREDICTED: proteasome subunit alpha type-2-B [Beta vulgaris subsp. vulgaris]
Swissprottr|Q8L4A7|PSA2B_ARATH7.00E-156Proteasome subunit alpha type-2-B
trEMBLtr|D7T9I6|D7T9I6_VITVI8.00E-160Proteasome subunit alpha type {ECO:0000256|RuleBase:RU000551}
TAIRAT1G792102.00E-155N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002847326744761315+
Transcript Sequence

Network for GWHGAAEX010704

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10584.8Proteasome_A_N6263.50E-08
PF00227.25Proteasome312133.80E-60
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02726PSMA2 Proteasome map03050

Gene Ontology

GO term OntologyName
GO:0051603Biological Processproteolysis involved in cellular protein catabolic process
GO:0006511Biological Processubiquitin-dependent protein catabolic process
GO:0004298Molecular Functionthreonine-type endopeptidase activity
GO:0004175Molecular Functionendopeptidase activity
GO:0019773Cellular Componentproteasome core complex, alpha-subunit complex
GO:0005839Cellular Componentproteasome core complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms56.110
SRR2545915Juvenile tuber68.430
SRP108465SRR5643513five period of Gastrodia elata85.700
SRR5643514five period of Gastrodia elata101.100
SRR5643515five period of Gastrodia elata84.980
SRR5643524five period of Gastrodia elata94.330
SRR5643525five period of Gastrodia elata52.610
SRR5643528five period of Gastrodia elata69.140
SRR5643658five period of Gastrodia elata53.980
SRR5643659five period of Gastrodia elata75.210
SRR5643660five period of Gastrodia elata70.610
SRR5643661five period of Gastrodia elata69.150
SRR5643662five period of Gastrodia elata60.360
SRR5643663five period of Gastrodia elata66.260
SRR5643664five period of Gastrodia elata56.730
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_189.770
SRR6049655Rhizomagastrodiae_C368-T10_good_1116.470
SRR6049656Rhizomagastrodiae_C368-T07_good_1112.880
SRR6049657Rhizomagastrodiae_C368-T07_good_184.220
SRR6049658Rhizomagastrodiae_C368-T04_good_190.080
SRR6049659Rhizomagastrodiae_C368-T04_good_186.800
SRR6049660Rhizomagastrodiae_C368-T01_good_1103.040
SRR6049661Rhizomagastrodiae_C368-T04_good_197.510
SRR6049662Rhizomagastrodiae_C368-T01_good_1136.460
SRR6049663Rhizomagastrodiae_C368-T01_good_1137.750
SRR6049664Rhizomagastrodiae_C368-T10_good_1134.880
SRR6049665Rhizomagastrodiae_C368-T10_good_1134.880
SRP279888GastroGastrodia elata tuber 85.85
JuvenJuvenile tuber99.25
Mother_GastroMother tuber of Gastrodia elata 68.48
Mother_JuvenMother tuber of Juvenile 64.43