Detail information of GWHGAAEX010708/evm.TU.scaffold_31.83
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|229819167|ref|YP_002880693.1| | 2.00E-33 | fatty acid desaturase [Beutenbergia cavernae DSM 12333] |
| KOG | KOG4232 | 0 | Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase |
| nr | gi|720017313|ref|XP_010261428.1| | 0 | PREDICTED: delta(8)-fatty-acid desaturase-like [Nelumbo nucifera] |
| Swissprot | tr|Q43469|SLD1_HELAN | 0 | Delta(8)-fatty-acid desaturase |
| trEMBL | tr|W9RE23|W9RE23_9ROSA | 0 | Fatty acid desaturase 3 {ECO:0000313|EMBL:EXB66859.1} |
| TAIR | AT2G46210 | 0 | Fatty acid/sphingolipid desaturase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000028 | 5460422 | 5461780 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010708
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00173.27 | Cyt-b5 | 13 | 82 | 1.00E-21 |
| PF00487.23 | FA_desaturase | 139 | 409 | 1.00E-34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006629 | Biological Process | lipid metabolic process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 154.630 |
| SRR2545915 | Juvenile tuber | 145.960 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 237.550 |
| SRR5643514 | five period of Gastrodia elata | 237.910 | |
| SRR5643515 | five period of Gastrodia elata | 412.050 | |
| SRR5643524 | five period of Gastrodia elata | 262.550 | |
| SRR5643525 | five period of Gastrodia elata | 145.440 | |
| SRR5643528 | five period of Gastrodia elata | 148.780 | |
| SRR5643658 | five period of Gastrodia elata | 103.930 | |
| SRR5643659 | five period of Gastrodia elata | 190.030 | |
| SRR5643660 | five period of Gastrodia elata | 160.460 | |
| SRR5643661 | five period of Gastrodia elata | 165.470 | |
| SRR5643662 | five period of Gastrodia elata | 157.340 | |
| SRR5643663 | five period of Gastrodia elata | 116.980 | |
| SRR5643664 | five period of Gastrodia elata | 217.170 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 328.570 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 305.930 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 288.280 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 241.120 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 259.690 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 290.920 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 340.880 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 257.380 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 251.180 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 381.720 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 414.780 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 414.780 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 95.60 |
| Juven | Juvenile tuber | 117.39 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 579.55 | |
| Mother_Juven | Mother tuber of Juvenile | 568.02 |