Detail information of GWHGAAEX010712/evm.TU.scaffold_31.89
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-104 | FOG: PPR repeat |
| nr | gi|695015451|ref|XP_009394596.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g27110-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SVP7|PP307_ARATH | 4.00E-105 | Pentatricopeptide repeat-containing protein At4g13650 |
| trEMBL | tr|I1IKR9|I1IKR9_BRADI | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI4G14980.1} |
| TAIR | AT4G13650 | 1.00E-104 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000028 | 5631493 | 5633541 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010712
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 89 | 113 | 0.00076 |
| PF01535.19 | PPR | 163 | 186 | 0.047 |
| PF01535.19 | PPR | 191 | 217 | 3.80E-07 |
| PF01535.19 | PPR | 266 | 290 | 0.032 |
| PF01535.19 | PPR | 294 | 316 | 1.70E-05 |
| PF01535.19 | PPR | 402 | 431 | 0.0025 |
| PF13041.5 | PPR_2 | 499 | 547 | 6.70E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.600 |
| SRR2545915 | Juvenile tuber | 11.540 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.890 |
| SRR5643514 | five period of Gastrodia elata | 10.810 | |
| SRR5643515 | five period of Gastrodia elata | 10.260 | |
| SRR5643524 | five period of Gastrodia elata | 11.210 | |
| SRR5643525 | five period of Gastrodia elata | 7.460 | |
| SRR5643528 | five period of Gastrodia elata | 5.530 | |
| SRR5643658 | five period of Gastrodia elata | 6.200 | |
| SRR5643659 | five period of Gastrodia elata | 14.310 | |
| SRR5643660 | five period of Gastrodia elata | 15.530 | |
| SRR5643661 | five period of Gastrodia elata | 15.860 | |
| SRR5643662 | five period of Gastrodia elata | 15.500 | |
| SRR5643663 | five period of Gastrodia elata | 13.880 | |
| SRR5643664 | five period of Gastrodia elata | 14.390 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.260 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.740 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.250 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.150 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.440 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.950 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.090 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.200 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.620 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.190 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.190 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.47 |
| Juven | Juvenile tuber | 14.55 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.67 | |
| Mother_Juven | Mother tuber of Juvenile | 10.50 |