Detail information of GWHGAAEX010714/evm.TU.scaffold_31.91


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG28885.00E-150Putative RNA binding protein
nrgi|695032027|ref|XP_009403545.1|8.06E-176PREDICTED: pre-mRNA-splicing factor 38B-like isoform X2 [Musa acuminata subsp. malaccensis]
trEMBLtr|A0A067K178|A0A067K178_JATCU7.00E-172Uncharacterized protein {ECO:0000313|EMBL:KDP26015.1}
TAIRAT5G373705.00E-150PRP38 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002857909485802796+
Transcript Sequence

Network for GWHGAAEX010714

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03371.14PRP381252815.50E-52
PF12871.6PRP38_assoc2953862.80E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12850PRPF38B Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms39.150
SRR2545915Juvenile tuber39.500
SRP108465SRR5643513five period of Gastrodia elata32.480
SRR5643514five period of Gastrodia elata31.010
SRR5643515five period of Gastrodia elata32.120
SRR5643524five period of Gastrodia elata30.830
SRR5643525five period of Gastrodia elata32.410
SRR5643528five period of Gastrodia elata32.210
SRR5643658five period of Gastrodia elata33.460
SRR5643659five period of Gastrodia elata34.180
SRR5643660five period of Gastrodia elata39.070
SRR5643661five period of Gastrodia elata37.890
SRR5643662five period of Gastrodia elata39.460
SRR5643663five period of Gastrodia elata37.240
SRR5643664five period of Gastrodia elata38.840
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_128.060
SRR6049655Rhizomagastrodiae_C368-T10_good_131.090
SRR6049656Rhizomagastrodiae_C368-T07_good_131.960
SRR6049657Rhizomagastrodiae_C368-T07_good_130.570
SRR6049658Rhizomagastrodiae_C368-T04_good_134.850
SRR6049659Rhizomagastrodiae_C368-T04_good_131.940
SRR6049660Rhizomagastrodiae_C368-T01_good_133.850
SRR6049661Rhizomagastrodiae_C368-T04_good_131.630
SRR6049662Rhizomagastrodiae_C368-T01_good_134.280
SRR6049663Rhizomagastrodiae_C368-T01_good_137.960
SRR6049664Rhizomagastrodiae_C368-T10_good_136.280
SRR6049665Rhizomagastrodiae_C368-T10_good_136.280
SRP279888GastroGastrodia elata tuber 31.74
JuvenJuvenile tuber29.14
Mother_GastroMother tuber of Gastrodia elata 39.01
Mother_JuvenMother tuber of Juvenile 29.51