Gene detail

Detail information of GWHGAAEX010720/evm.TU.scaffold_31.104

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743868526\|ref\|XP_010905595.1\|	PREDICTED: uncharacterized protein LOC105032750 isoform X2 [Elaeis guineensis]
trEMBL	tr\|Q9AYI6\|Q9AYI6_ORYSJ	Putative maize transposon MuDR mudrA-like protein {ECO:0000313\|EMBL:AAK00423.2}
TAIR	AT3G05850	transposable element gene

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000028	6400068	6421442	+

Transcript Sequence
>GWHTAAEX010720 ATGGTAGAAAGGAAGATTGTGGTTATTTGCCAGTATGGTGGAGAATTTGTTACCAGCAGTGATGGATCTCTGTCTTATTTTGGTGGAGAGGCACATGCAATTGATGTTGGTTTAGACATGCTGTTTGATGAATTCAACTCAGAAATAAGCAATATGTTTAATATTGATATAACTTGCATATCTATCAAATATTTTCTTCCAAGTAATAAAAAAACTCTTATCACAATTTCTAATGACAAAGATTTGCGTCGTATGGTTCATTTTAATGGGAATGCTGCAGCAGCAGAGGTTTATCTCTTAAATAAGGTTGATCTAAGGATAACCAAGAGCATAGTAGCTGATTCGGGTACCTCTATTGTTGCATCTGCTAATCAGAATAAACGGAAGGGGCCTCAAGGTGTAACCAGGGCAACAAAAAACAAGGCCCGCCATTCTTCTGAATTAGGTTTTGCTAATGCAGCTACCGATGCCATTGTGGACAGCTCTGATTCAATTCAACAAAATGTAGTGGCGGCTTATGAAAATAATACACATATTGGACCTTTTTCTGCTGCTCAAACTTATGATAACAGGATCATTGTAGCAGACTTCGCTATGCCTGTCTTACCTGTTACTGATATCATGGACAGGTTTAGACAGCAGGGATTAGCTACAGTTATTAATGTTGATAGGGCAAGGAGCATCTTATTTGATCCAGGTGCCTCTCTTCTTACGTCCATAGTCACTTCTGAAAATGTTAGGCATCTCAGTACAAACAGTCTCTGGGATGATGTGATCACCGGTGTGGGTCAAGAGTTTGATAATGTCAAGGACTTTAGGGGTCAGTTATGTAAATATGCCATTAGTAAAGGCTTTATTTACAAATTTATCAAGAACGAGAGCACTCGTGTGACCGTGAAATGCAGCAATGAGGAGAATTGCACATGGAGGATACATGCCTCTGAATCATCTCACAAGCAGAAGTTTGTGATTAAGAAAATGAATAATGTGCACACTTGCGGGGGAGGAAATGGAAAGAATGGTCAAAGGAGAGCAACAAGGCAATGGCTGACAAGCATTATCAAAGAGAAGCTGCATGATTCGCCTCAATGTAAGCCCAAAGAAATTGTGAGGGAGCTTTTTGAAGATTATGGAGTGAGCTTGACTTATTCCCAAGTTTGGAGAGGAAGAGAGGTTGCTCAGAAGGAGATGTTCAGCAACCTGAAAGAGACATATAGCCTTCTTCCTTGGTATTGCGAAAGGATATTGGAAACAAACCCGGGCAGTGTGGCTGTATTATACACTTCCGTGGATTCAAAATTTCGCCGCCTTTTCGTGTCCTACCACGCTTCTCTTCATGGTTTCGAGCATGGATGCCGCCCCCTCATTTTTCTTGATAGAATTCCTCTGAAATCTAACAATCAATGCAAGCTATTAGCTGCTGCTTCAGTTGATGCAAATGACACCATCTTTCCGGTTTCGTTCGCTGTTGTAGAGGATGAGACGTTTGACAGCTGGCTCTGGTTCCTGGCACAAATTAAATGTGCCTTAACGAAACCTAGACTCATCACCTTCATTTCTAACAGGCAGAAGGGTTTGGATGAGGCTGTGGCTCAAGTGTTTCCTGATAGTCATCATAGCTATTGTTTGCGTGAGCTCATAGAGGATTTTAAAGGGGAGCTGAAGAGAGGGCCATGGTCGCAGCAGCAGAAGGATGCGATGGCCGATGATTTCACTCGCGCTGCCCAAGTATGCACCATTGAGGATTTCAACAATTCCATCGACGATATACGGAGAATTTCGAGAGATGTTGCTCACTGGGTCATGGCCAGCAAGCCCGAGAATTGGTCGGACGCCTTGTTTGGAGGTGCACGTTACGACCATTTATCCTCGAAAATCGTCGACTCGTTCACCAACTGGATCCCCGCTAAGTGTGAGTCCTCAATAGTTCTCATTCTCAATGCTGTTCAAAACAAGATGATGGAGATGATGCACTTGAGAATGGAGCTCTCCAACACTTGGGGGATTGGCTGTGGTCCGTTGACACCGTCTATGGAGCAGAAGCTGCAGAAGGAAGTATCGAAAGCACGCAAGCTGAACGTCCTGTGCTCTTCTGACACCGTGTTCGAAGTGCGGGGAAACACGATATATGTTGTCAACATTGGCGATTGGGTCTGCTCATGCAGAAGGTGGCAGATTTCCGGCTTGCCGTGTCCACATGCTATTGCGGTTTTCAACCGAATCAATAGGTCTGTGTACGATTATTGCTCGGGTTATTTCCGGATCGATTGCTACCGCTCGACTTATGCGCAATCAATTCATCCAATACCCAATATTGCTGATACCGATCTGAATGCAGCTTGCTTGTATCTTCCGCCACCTCGGCGAGTGCATGGGCGGCCGAGGAGGAAAAGATTTAATCCCCATATTAATGCGGAAACAGTTGTAAGGCTGTGCAGCAGGTGCAAGGTTGCTGGGCATAACAAGGCCACTTGTGAAGCTCTATTGTAA

Network for GWHGAAEX010720

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00564.23	PB1	21	87	1.60E-06
PF03108.14	DBD_Tnp_Mut	258	324	4.70E-19
PF10551.8	MULE	464	546	1.50E-15
PF04434.16	SWIM	710	741	2.80E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	Molecular Function	zinc ion binding
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	13.730
SRP064423	SRR2545915	Juvenile tuber	12.700
SRP108465	SRR5643513	five period of Gastrodia elata	11.300
	SRR5643514	five period of Gastrodia elata	12.320
	SRR5643515	five period of Gastrodia elata	13.480
	SRR5643524	five period of Gastrodia elata	11.270
	SRR5643525	five period of Gastrodia elata	16.880
	SRR5643528	five period of Gastrodia elata	13.130
	SRR5643658	five period of Gastrodia elata	15.480
	SRR5643659	five period of Gastrodia elata	12.750
	SRR5643660	five period of Gastrodia elata	11.330
	SRR5643661	five period of Gastrodia elata	12.760
	SRR5643662	five period of Gastrodia elata	13.160
	SRR5643663	five period of Gastrodia elata	13.030
	SRR5643664	five period of Gastrodia elata	13.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.370
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.160
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.300
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.210
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.160
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	14.900
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.530
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.180
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.040
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.330
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.840
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.840
SRP279888	Gastro	Gastrodia elata tuber	12.90
	Juven	Juvenile tuber	13.84
	Mother_Gastro	Mother tuber of Gastrodia elata	21.16
	Mother_Juven	Mother tuber of Juvenile	15.86