Gene detail

Detail information of GWHGAAEX010737/evm.TU.scaffold_32.1

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|51244847\|ref\|YP_064731.1\|	3.00E-89	helicase [Desulfotalea psychrophila LSv54]
KOG	KOG0385	0	Chromatin remodeling complex WSTF-ISWI, small subunit
nr	gi\|743784776\|ref\|XP_010921744.1\|	0	PREDICTED: putative chromatin-remodeling complex ATPase chain [Elaeis guineensis]
Swissprot	tr\|Q8RWY3\|ISW2_ARATH	0	Putative chromatin-remodeling complex ATPase chain
trEMBL	tr\|W9RF30\|W9RF30_9ROSA	0	Putative chromatin-remodeling complex ATPase chain {ECO:0000313\|EMBL:EXB74831.1}
TAIR	AT3G06400	0	chromatin-remodeling protein 11

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000032	74719	112458	+

Transcript Sequence
>GWHTAAEX010737 GTCCTGCTACATTAATAGATGATTAAGGAGATCCTGAGCAAACACAGGGCACCTACATCGGTTGATACCATTTTATGCATCGTCTTTGATTTCCAGTCTTCCCATTGTTCAAATCGAAAACCCTCTCTTGCTCTTTGATTGGTTGTCCAGCGATGGCAAGGGCTAGGGTTCCTTCGGACTTATCGGAAGAGGAGACCTCCACTGGCTCTCTCTCCTACTCGGAAGCCGATGATATACGGGACCGTGCAGCAGCAGAGGAGGACGAGGAGGAGCTCGAAGCAGTGGATAGGACCGCCAGCCCTGGTGGCGAGGAGGACAATTATCAGTCGATGGAAGATGATGCAGACATTGCTGCTGAGAACTCCGACGTTGATAAAGAGGTTGAAGAATCTTCCTTGAACAATGAGATCAGCAAGCATGAGAGAGCTCGTCTTAAGGAAATGCAAAGTCTAAAGAAGCAAAAATTTAAAGAGATTTTGAGTTTACAAAATGCTGCTATTGATGCTGACATGAATAATAAAGGAAAGGGGAGGTTGAAGTATCTCCTACAACAGACTGAAATATTTGCTCATTTTGCTAAAGGATGTCACTCTGCATCTGAGAAAAGATCTGGAGGACGAGGCCGTCATGCTTCTAAATTAACTGAAGTAGAGGAAGATGAAGAATATCTTAAAGAGGAAGAGAACAGTCTTGTAGGCACAGGAGGGACCCGATTGGTATCCCAACCATCGTGTATACAAGGTAAGATGAGGGATTATCAATTAGCTGGGCTAAACTGGTTGATTCGATTGTATGAAAATGGCATTAATGGGATTCTTGCTGATGAGATGGGTCTTGGAAAGACATTGCAAACCATTTCTTTACTTGGTTATTTGCGTGAATTTAGAGGAATTAATGGCCCACACATGGTTGTAGCGCCTAAGTCCACGCTTGGCAATTGGATGAATGAGATTCGACGATTCTGCCCTGTTTTACGTGGAGTAAAGTTCTTAGGAAATCCTGAAGAAAGGAAATACATAAGGGATAATTTACTTGTTGCTGGGAAGTTTGATGTATGTGTAACAAGTTATGAGATGGCCATTAAAGAGAAAGCAGCCTTAAGGCGCTTTAGTTGGCGTTACGTGATCATTGATGAGGCTCATCGGATAAAGAATGAGAATTCTCTTTTATCTAAAACAATGAGAGTGTATACTACTAATTATCGTCTTTTGATCACTGGTACACCACTTCAGAATAATCTTCATGAGCTCTGGGCACTCCTCAACTTTTTATTGCCCGAGATATTTAGTTCAGCTAACACATTTGATGAATGGTTTCAAATATCTGGTGAAAGTGATCAGCAGGAGGTTGTTCAACAGCTTCACAAGGTTCTTCGGCCATTTTTACTACGGAGACTTAAATCAGACGTAGAGAAGGGTTTGCCCCCAAAGAAGGAAACTATTCTTAAAGTAGGAATGTCCCAGATGCAAAAGCATTATTATCGTGCATTGCTTCAAAAAGATTTGGATGCGATAAATGCTGGTGGGGAAAGAAAGCGCCTTTTAAACATTGCTATGCAGCTGCGCAAATGCTGTAACCACCCGTACTTATTCCAGGGTGCTGAACCTGGTCCTCCATATACCACTGGGAATCATTTAATAACAAATGCAGGAAAAATGGTTCTCCTTGATAAATTGCTGCCAAAGTTGAAGGAGCGTGATTCAAGGGTTTTGATATTTTCGCAGATGACAAGGCTATTGGATATCCTTGAAGACTACCTAATGTTTAGAGGATATCAATACTGTCGAATTGATGGAAGTACTGGTGGGGAAGATCGTGATGCCTCAATTGAGGCTTTTAATCGGCCAGGAAGTGACAAGTTTGTTTTCTTGCTTTCAACTAGGGCTGGTGGTTTAGGTATTAACCTTGCCACAGCAGATGTAGTCATACTTTATGACAGTGATTGGAATCCTCAAGTTGATTTGCAAGCACAAGATCGCGCTCACAGGATTGGGCAGAAGAAAGAAGTGCAAGTTTTCAGATTTTGTACTGAGTTTGCGATTGAGGAAAAAGTCATTGAGAGGGCATATAAGAAACTTGCACTTGATGCATTAGTGATTCAACAAGGTCGGTTGGCAGAGCAAAAAGCTGTAAATAAGGATGAGCTGTTGCAAATGGTAAGATTTGGTGCTGAGATGGTTTTTAGCTCCAAAGACAGCACCATAACAGATGAAGATATTGATCGGATCATAGCTAAAGGAGAAGAAGCAACTGCTGAGCTTGATGCAAAGATGAAGAAATTTACTGAAGATTGCATTAAGTTCAAAATGGATGACAATGCTGAGTTATATGATTTTGATGATGATAAGGATGATACTAAGTTTGAATTCAAGAAGATTGCTAATGAGAATTGGATTGAACCACCCAAAAGAGAGCGCAAACGCAATTACTCTGAAGCAGAATACTTCAAGCAGGCAATGCGCCAGGGTACTGGTCCTTCAAAACCAAAAGAGCCACGAATCCCTAGAATGCCACAACTGCACGATTTCCAGTTTTTCAATAGCCAAAGGCTTATCCAGCTTTATGAAAAGGAAGTTCGATATCTGATGCAAGCCCATCAAAAGAATCAATCAAAAGATTCAGTAGGTGATAATGATGATCTCGAAGAAATAGGCGAATCATTGACTACAGAGGAACAAGCAGAGAAAGACCAGTTGTTAGAAGAGGGTTTCTCAACATGGTCGAGGAGGGACTTCAATACATTTATTCGGGCTTGTGAGAAGTATGGGCGCAGCGATATAAAAAGTATAGCGTCTGAAATGGAAGGGAAAACACAAGAGGAAGTTGAAAGATATGCCAAGATTTTCCAAGAGAAATTCAAGGAGCTTAATGACTATGATCGTATAATGAAGAATATTGAGAGAGGAGAGGCAAGGATCTCAAGGAAAGACGAGATAATGAAGGCCATTGGAAAAAAGCTGGATCGCTACAAGAATCCTTGGCTGGAGTTAAAGATTCAGTACGGTCAGAACAAGGGGAAGCTGTATAATGAAGAATGCGACCGCTTCATGTTATGTATGGTCCATAAACTTGGTTATGGAAACTGGGATGAGCTGAAGATGGCTTTCCGCTTGTCGCCTTTATTTCGTTTTGATTGGTTTGTTAAATCACGTACAACTCAAGAGCTGGCGAGGCGCTGCGATGCTCTTATTCGTTTGGTTGAAAAGGAAAATCAGGAGCACGATGAACGTGAACGGCAAGCCAGGAAGGATAAGAAACATGCCAAGATTATGACACCATCCAAAAGACCCATGACAAAAGCACCAGCTTCGGAGGCGGCTGCTTCAAATTTGAAGAGACGAAAGCAATAAGTTATAAATGATTACAAATATGATCGGCTCAGGAAACCAATTGGGAAGAAACTTTCTGCTACTTTTGAAGATTTGCTAGTTATCTTTTGGGTGAGCCAGATGGAGCCAATAAAAGATGATATTTTAATCTTTTATTTTAACTTGTAATTTATTTTTGTTTGGAAATGAATTGTAAAGTTTATTATTATGGATGTTTGTGAGGTAGATGTTTAGAGGCTCTATGATTGTCTTAATGGATGAATTATAATTATACTTAGTTACTTTAGTTTATTTAATTATTGTGTATATTGCTTGGAATCCACAACCTTAATTCATGGGCTTTCACAACTAGCATTAGAGCAAAGGCTGAGGAGCCTATTTAGTACTTGAAATAGTTAACATTAAATTGAGAGTGCG

Network for GWHGAAEX010737

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13892.5	DBINO	82	142	8.10E-05
PF00176.22	SNF2_N	212	479	2.30E-71
PF00271.30	Helicase_C	502	614	4.30E-20
PF09110.10	HAND	763	845	7.50E-09
PF09111.9	SLIDE	909	1019	2.00E-44

Protein Sequence

>GWHPAAEX010737
MARARVPSDLSEEETSTGSLSYSEADDIRDRAAAEEDEEELEAVDRTASPGGEEDNYQSMEDDADIAAENSDVDKEVEESSLNNEISKHERARLKEMQSLKKQKFKEILSLQNAAIDADMNNKGKGRLKYLLQQTEIFAHFAKGCHSASEKRSGGRGRHASKLTEVEEDEEYLKEEENSLVGTGGTRLVSQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLREFRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRGVKFLGNPEERKYIRDNLLVAGKFDVCVTSYEMAIKEKAALRRFSWRYVIIDEAHRIKNENSLLSKTMRVYTTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSANTFDEWFQISGESDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKHYYRALLQKDLDAINAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGNHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGSTGGEDRDASIEAFNRPGSDKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEFAIEEKVIERAYKKLALDALVIQQGRLAEQKAVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDCIKFKMDDNAELYDFDDDKDDTKFEFKKIANENWIEPPKRERKRNYSEAEYFKQAMRQGTGPSKPKEPRIPRMPQLHDFQFFNSQRLIQLYEKEVRYLMQAHQKNQSKDSVGDNDDLEEIGESLTTEEQAEKDQLLEEGFSTWSRRDFNTFIRACEKYGRSDIKSIASEMEGKTQEEVERYAKIFQEKFKELNDYDRIMKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKMAFRLSPLFRFDWFVKSRTTQELARRCDALIRLVEKENQEHDERERQARKDKKHAKIMTPSKRPMTKAPASEAAASNLKRRKQ

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0043044	Biological Process	ATP-dependent chromatin remodeling
GO:0006338	Biological Process	chromatin remodeling
GO:0003677	Molecular Function	DNA binding
GO:0031491	Molecular Function	nucleosome binding
GO:0005524	Molecular Function	ATP binding
GO:0016818	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0003676	Molecular Function	nucleic acid binding
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.100
SRP064423	SRR2545915	Juvenile tuber	13.410
SRP108465	SRR5643513	five period of Gastrodia elata	19.570
	SRR5643514	five period of Gastrodia elata	19.060
	SRR5643515	five period of Gastrodia elata	14.460
	SRR5643524	five period of Gastrodia elata	16.280
	SRR5643525	five period of Gastrodia elata	5.050
	SRR5643528	five period of Gastrodia elata	5.120
	SRR5643658	five period of Gastrodia elata	6.160
	SRR5643659	five period of Gastrodia elata	14.260
	SRR5643660	five period of Gastrodia elata	12.480
	SRR5643661	five period of Gastrodia elata	13.390
	SRR5643662	five period of Gastrodia elata	7.980
	SRR5643663	five period of Gastrodia elata	12.960
	SRR5643664	five period of Gastrodia elata	5.700
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.010
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.030
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	25.590
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.710
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.310
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.750
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.180
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.910
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	30.960
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.730
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	27.210
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	27.210
SRP279888	Gastro	Gastrodia elata tuber	7.09
	Juven	Juvenile tuber	14.86
	Mother_Gastro	Mother tuber of Gastrodia elata	5.30
	Mother_Juven	Mother tuber of Juvenile	8.31