Detail information of GWHGAAEX010739/evm.TU.scaffold_32.6


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG33175.00E-68Translocon-associated complex TRAP, beta subunit
nrgi|719982807|ref|XP_010250570.1|3.34E-90PREDICTED: uncharacterized protein LOC104592784 [Nelumbo nucifera]
trEMBLtr|F6H446|F6H446_VITVI1.00E-80Putative uncharacterized protein {ECO:0000313|EMBL:CCB46990.1}
TAIRAT5G140305.00E-68translocon-associated protein beta (TRAPB) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000032190800204178+
Transcript Sequence

Network for GWHGAAEX010739

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05753.13TRAP_beta141904.90E-55
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13250SSR2 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms50.100
SRR2545915Juvenile tuber71.080
SRP108465SRR5643513five period of Gastrodia elata124.560
SRR5643514five period of Gastrodia elata126.110
SRR5643515five period of Gastrodia elata129.450
SRR5643524five period of Gastrodia elata132.930
SRR5643525five period of Gastrodia elata75.780
SRR5643528five period of Gastrodia elata99.900
SRR5643658five period of Gastrodia elata75.070
SRR5643659five period of Gastrodia elata126.900
SRR5643660five period of Gastrodia elata114.580
SRR5643661five period of Gastrodia elata131.420
SRR5643662five period of Gastrodia elata105.240
SRR5643663five period of Gastrodia elata122.530
SRR5643664five period of Gastrodia elata98.720
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_192.760
SRR6049655Rhizomagastrodiae_C368-T10_good_1150.880
SRR6049656Rhizomagastrodiae_C368-T07_good_1128.330
SRR6049657Rhizomagastrodiae_C368-T07_good_189.230
SRR6049658Rhizomagastrodiae_C368-T04_good_191.350
SRR6049659Rhizomagastrodiae_C368-T04_good_180.770
SRR6049660Rhizomagastrodiae_C368-T01_good_192.560
SRR6049661Rhizomagastrodiae_C368-T04_good_198.320
SRR6049662Rhizomagastrodiae_C368-T01_good_1137.980
SRR6049663Rhizomagastrodiae_C368-T01_good_1117.260
SRR6049664Rhizomagastrodiae_C368-T10_good_1162.840
SRR6049665Rhizomagastrodiae_C368-T10_good_1162.840
SRP279888GastroGastrodia elata tuber 153.35
JuvenJuvenile tuber160.26
Mother_GastroMother tuber of Gastrodia elata 144.48
Mother_JuvenMother tuber of Juvenile 142.36