Gene detail

Detail information of GWHGAAEX010749/evm.TU.scaffold_32.23

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|32471474\|ref\|NP_864467.1\|	9.00E-25	serine/threonine-protein kinase pknA [Rhodopirellula baltica SH 1]
KOG	KOG1187	0	Serine/threonine protein kinase
nr	gi\|719982891\|ref\|XP_010250600.1\|	0	PREDICTED: serine/threonine-protein kinase PBS1 [Nelumbo nucifera]
Swissprot	tr\|Q9FE20\|PBS1_ARATH	0	Serine/threonine-protein kinase PBS1
trEMBL	tr\|A0A067JSB9\|A0A067JSB9_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP26856.1}
TAIR	AT5G13160	0	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000032	757483	783231	+

Transcript Sequence
>GWHTAAEX010749 TCGGCCGGCAAGTCTTCGATTCTCTTCACGCCAGCGGGAATCAAATGGCTCTCCATTATCTTCCCTCCCTAAATTCAGTGCAAAATTCAATTTTCTTTGCAGTTTTGCCCAGCACATCCAGGGGACAGGAGCTCCAATATGCAAATCTGGGCATTGGATTAGGTTACAGCAATCCGTTTCGTTGTTTAACGAGTCAGAATGTTATCGGGCTCCATCGAAGCGGCGGAAAGATCCCTAGTTTTTGGCAGTTTATGATTGTTGTTAGCAAATGGGCTGTTTCGCTTGTTTCGCTTCGCTGGAGATGGATCAATCGCATTCTCGTGGCGAGTGTGATGGAATGAAAGAAGAGCAGACTGTAGAAGGTTCTTCAATGAAGATTTTTTTTTCTGGTGCGAGCAGAATTAGAACAAGAAGCAATATTGGTTCCAAAGGGATAAAGCTGGCTCAGAAAGATGAAGCTGGTGGTGTAACCTTATCAGCTCAGACATTCGCATTCAGGGAGCTTGCAGCTGCAACAAAGAATTTTCGAAAAGATTGCCTCATTGGTGAAGGGGGGTTTGGCCGGGTTTATAAAGGAAGGTTGGAGAGCACTCGACAGATTGTAGCTATAAAACGGCTTGAAAAGGATGGGCTGCAAGGAAATAGAGAATTCCTAGTGGAGGTTCTCATGCTTAGTCTTTTACACCACCCAAACCTTGTTAACTTAATTGGCTATTGTGCTGATCGAGATCAACGACTTCTTGTGTATGAATTCATGCCACATGGATCTCTAGAAGATCATTTGCATTATCTCCCGCTGGATAAGGAGTCCTTGGATTGGAATACAAGGATGAAAATTGCAGCAGGTGCAGCTAGAGGGTTGGAGTACCTTCATGATAAAGCCAACCCTCCAGTCATTTATAGAGACTTCAAATCTTCCAACATATTATTGGATGATGGGTTTCATCCAAAGCTCTCTGATTTTGGTCTTGCAAAGCTTGGTCCTGTTGGTGATGAGTCTTATGTTTCAACTAGAGTGATGGGGACTTTTGGATATTGTGCTCCGGAATATGTTATGACAGGGCAGTTGACAGCCAAATCTGATGTCTATAGCTTTGGAGTTGTCTTGTTGGAGCTAATCACTGGAAGAAAATCGATTGACAGCTCAAGAGTTCATGGAGAACAGAATCTTATTCGCTGGGCACGACCAATGCTGAATGACCACAGGAAGCTTTCAAAGCTGGTGGACCCAAAACTTGGTGGCCAGTACCCGATGCGAGGTCTCTACCAAGCAATTGCTATAGCCTCCATGTGCATCCAGGAAGAGGCTGCCGCGCGCCCGCTTATTGCTCATGTTGTCACTGCACTGTCATACATTATGGAATCGCAATTCTACAATTCGAAGGTGGCACTTGCGAATCTAGGGAGCCACGGGTCGGCCAAAGAGGGCTTCGGGCCAGAAAACCAAGAAGACGGGCTTACGTGGGATGATATTTGTGGGGCTGTGACACCCAAGGAGACTCCTGGCATCATAATCAAGGATTCTGTTAGGGAGCGGGCCGTGGCCGAGGCTATGTTATGGGGCTCAAATTGGAGGGACAAGCAGCGTGCCTCCATGCAGGAGGCTTTGGCTCTTTGAATGTGTGTGTGTATGTTTATGTATATAAAAATATGTATATGTATATGTTAATGTTGTGGTTCGGTAGTTGAGTTCTTCAGTCTGAACTTTGGCAGGTTCAGGGGTTCAAATTTTATAGAAAAAAAGATAATCAAGTCGATGCTTACATAAAAAA

Network for GWHGAAEX010749

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	88	356	9.40E-49

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-1

KEGG pathway

KO	Enzyme	pathway	mapID
K13430	PBS1	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.890
SRP064423	SRR2545915	Juvenile tuber	7.590
SRP108465	SRR5643513	five period of Gastrodia elata	5.560
	SRR5643514	five period of Gastrodia elata	5.160
	SRR5643515	five period of Gastrodia elata	6.190
	SRR5643524	five period of Gastrodia elata	4.610
	SRR5643525	five period of Gastrodia elata	4.260
	SRR5643528	five period of Gastrodia elata	4.650
	SRR5643658	five period of Gastrodia elata	3.710
	SRR5643659	five period of Gastrodia elata	2.440
	SRR5643660	five period of Gastrodia elata	3.020
	SRR5643661	five period of Gastrodia elata	2.870
	SRR5643662	five period of Gastrodia elata	2.370
	SRR5643663	five period of Gastrodia elata	2.220
	SRR5643664	five period of Gastrodia elata	2.430
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.670
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.840
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.820
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.350
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.190
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.880
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.180
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.240
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.410
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.200
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.920
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.920
SRP279888	Gastro	Gastrodia elata tuber	2.41
	Juven	Juvenile tuber	7.51
	Mother_Gastro	Mother tuber of Gastrodia elata	14.14
	Mother_Juven	Mother tuber of Juvenile	13.76