Detail information of GWHGAAEX010752/evm.TU.scaffold_32.27
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|124022698|ref|YP_001017005.1| | 0 | protein ClpC [Prochlorococcus marinus str. MIT 9303] |
| KOG | KOG1051 | 0 | Chaperone HSP104 and related ATP-dependent Clp proteases |
| nr | gi|743858218|ref|XP_010942299.1| | 0 | PREDICTED: chaperone protein ClpD2, chloroplastic [Elaeis guineensis] |
| Swissprot | tr|Q7XL03|CLPD2_ORYSJ | 0 | Chaperone protein ClpD2, chloroplastic (Precursor) |
| trEMBL | tr|W1PFC6|W1PFC6_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERN06429.1} |
| TAIR | AT5G51070 | 0 | Clp ATPase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000032 | 980649 | 987314 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010752
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02861.19 | Clp_N | 87 | 115 | 2.70E-05 |
| PF02861.19 | Clp_N | 168 | 215 | 4.90E-06 |
| PF00004.28 | AAA | 303 | 418 | 2.20E-10 |
| PF07724.13 | AAA_2 | 649 | 823 | 2.90E-51 |
| PF10431.8 | ClpB_D2-small | 829 | 907 | 3.10E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0019538 | Biological Process | protein metabolic process |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 41.410 |
| SRR2545915 | Juvenile tuber | 26.440 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 47.790 |
| SRR5643514 | five period of Gastrodia elata | 35.220 | |
| SRR5643515 | five period of Gastrodia elata | 38.440 | |
| SRR5643524 | five period of Gastrodia elata | 35.470 | |
| SRR5643525 | five period of Gastrodia elata | 134.600 | |
| SRR5643528 | five period of Gastrodia elata | 150.390 | |
| SRR5643658 | five period of Gastrodia elata | 229.710 | |
| SRR5643659 | five period of Gastrodia elata | 7.220 | |
| SRR5643660 | five period of Gastrodia elata | 5.350 | |
| SRR5643661 | five period of Gastrodia elata | 5.290 | |
| SRR5643662 | five period of Gastrodia elata | 9.080 | |
| SRR5643663 | five period of Gastrodia elata | 5.860 | |
| SRR5643664 | five period of Gastrodia elata | 11.860 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 30.850 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.910 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 40.090 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 51.160 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 69.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 81.940 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 56.600 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 78.360 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 35.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 51.670 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 30.630 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 30.630 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.61 |
| Juven | Juvenile tuber | 37.14 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 336.10 | |
| Mother_Juven | Mother tuber of Juvenile | 124.92 |