Detail information of GWHGAAEX010754/evm.TU.scaffold_32.29_evm.TU.scaffold_32.30
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|163854545|ref|YP_001628843.1| | 2.00E-24 | hypothetical protein Bpet0241 [Bordetella petrii DSM 12804] |
| nr | gi|695006432|ref|XP_009389712.1| | 0 | PREDICTED: pectate lyase-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P40973|PLY_LILLO | 0 | Pectate lyase (Precursor) |
| trEMBL | tr|M0S8M4|M0S8M4_MUSAM | 0 | Pectate lyase {ECO:0000256|RuleBase:RU361123} |
| TAIR | AT1G14420 | 0 | Pectate lyase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000032 | 1019635 | 1024123 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010754
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04431.12 | Pec_lyase_N | 27 | 81 | 2.90E-17 |
| PF00544.18 | Pec_lyase_C | 180 | 360 | 4.60E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | PL1 |
| Carbohydrate-Active enzymes Family | PL1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01728 | pel | Metabolic pathways | map01100 |
| Pentose and glucuronate interconversions | map00040 | ||
| Quorum sensing | map02024 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030570 | Molecular Function | pectate lyase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.000 |
| SRR5643514 | five period of Gastrodia elata | 0.040 | |
| SRR5643515 | five period of Gastrodia elata | 0.000 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.040 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.040 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.030 | |
| SRR5643664 | five period of Gastrodia elata | 0.040 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.190 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 0.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.02 | |
| Mother_Juven | Mother tuber of Juvenile | 0.04 |