Detail information of GWHGAAEX010756/evm.TU.scaffold_32.33


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|163854545|ref|YP_001628843.1|4.00E-07hypothetical protein Bpet0241 [Bordetella petrii DSM 12804]
nrgi|695006432|ref|XP_009389712.1|4.94E-68PREDICTED: pectate lyase-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q944R1|PLY15_ARATH1.00E-61Probable pectate lyase 15 (Precursor)
trEMBLtr|M0S8M4|M0S8M4_MUSAM2.00E-68Pectate lyase {ECO:0000256|RuleBase:RU361123}
TAIRAT1G677502.00E-60Pectate lyase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003210254931036504-
Transcript Sequence

Network for GWHGAAEX010756

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01728pel Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Quorum sensingmap02024

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.330
SRR2545915Juvenile tuber0.500
SRP108465SRR5643513five period of Gastrodia elata3.580
SRR5643514five period of Gastrodia elata2.600
SRR5643515five period of Gastrodia elata3.550
SRR5643524five period of Gastrodia elata2.940
SRR5643525five period of Gastrodia elata2.280
SRR5643528five period of Gastrodia elata2.660
SRR5643658five period of Gastrodia elata2.270
SRR5643659five period of Gastrodia elata1.840
SRR5643660five period of Gastrodia elata1.800
SRR5643661five period of Gastrodia elata4.090
SRR5643662five period of Gastrodia elata1.390
SRR5643663five period of Gastrodia elata2.840
SRR5643664five period of Gastrodia elata3.650
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_11.200
SRR6049655Rhizomagastrodiae_C368-T10_good_16.270
SRR6049656Rhizomagastrodiae_C368-T07_good_11.090
SRR6049657Rhizomagastrodiae_C368-T07_good_11.160
SRR6049658Rhizomagastrodiae_C368-T04_good_10.310
SRR6049659Rhizomagastrodiae_C368-T04_good_10.860
SRR6049660Rhizomagastrodiae_C368-T01_good_11.650
SRR6049661Rhizomagastrodiae_C368-T04_good_10.110
SRR6049662Rhizomagastrodiae_C368-T01_good_11.780
SRR6049663Rhizomagastrodiae_C368-T01_good_11.330
SRR6049664Rhizomagastrodiae_C368-T10_good_11.080
SRR6049665Rhizomagastrodiae_C368-T10_good_11.080
SRP279888GastroGastrodia elata tuber 0.42
JuvenJuvenile tuber1.54
Mother_GastroMother tuber of Gastrodia elata 0.69
Mother_JuvenMother tuber of Juvenile 1.97