Detail information of GWHGAAEX010760/evm.TU.scaffold_32.39
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|264680920|ref|YP_003280830.1| | 1.00E-24 | nuclear protein SET [Comamonas testosteroni CNB-2] |
| KOG | KOG1080 | 0 | Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases |
| nr | gi|743796974|ref|XP_010924864.1| | 0 | PREDICTED: histone-lysine N-methyltransferase ATX4-like isoform X3 [Elaeis guineensis] |
| Swissprot | tr|Q9SUE7|ATX4_ARATH | 0 | Histone-lysine N-methyltransferase ATX4 |
| trEMBL | tr|M0S5M0|M0S5M0_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P06290_001} |
| TAIR | AT5G53430 | 0 | SET domain group 29 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000032 | 1105355 | 1122660 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010760
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00855.16 | PWWP | 287 | 381 | 1.60E-14 |
| PF13831.5 | PHD_2 | 614 | 648 | 1.90E-12 |
| PF13832.5 | zf-HC5HC2H_2 | 655 | 767 | 2.80E-27 |
| PF00856.27 | SET | 900 | 1005 | 1.50E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SET |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.200 |
| SRR2545915 | Juvenile tuber | 9.770 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.400 |
| SRR5643514 | five period of Gastrodia elata | 6.920 | |
| SRR5643515 | five period of Gastrodia elata | 8.270 | |
| SRR5643524 | five period of Gastrodia elata | 7.930 | |
| SRR5643525 | five period of Gastrodia elata | 10.190 | |
| SRR5643528 | five period of Gastrodia elata | 8.260 | |
| SRR5643658 | five period of Gastrodia elata | 8.330 | |
| SRR5643659 | five period of Gastrodia elata | 10.010 | |
| SRR5643660 | five period of Gastrodia elata | 8.350 | |
| SRR5643661 | five period of Gastrodia elata | 8.550 | |
| SRR5643662 | five period of Gastrodia elata | 8.130 | |
| SRR5643663 | five period of Gastrodia elata | 9.100 | |
| SRR5643664 | five period of Gastrodia elata | 8.510 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.960 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.330 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.940 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.910 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.290 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.370 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.900 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.330 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.280 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.620 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.620 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.79 |
| Juven | Juvenile tuber | 10.80 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 13.16 | |
| Mother_Juven | Mother tuber of Juvenile | 12.13 |