Detail information of GWHGAAEX010761/evm.TU.scaffold_32.41
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 3.00E-162 | FOG: PPR repeat |
| nr | gi|743770698|ref|XP_010915642.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Elaeis guineensis] |
| Swissprot | tr|A8MQA3|PP330_ARATH | 8.00E-169 | Pentatricopeptide repeat-containing protein At4g21065 |
| trEMBL | tr|F6HYE3|F6HYE3_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB59466.1} |
| trEMBL | tr|F6HYE3|F6HYE3_VITVI | 8.00E-37 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB59466.1} |
| TAIR | AT3G24000 | 3.00E-162 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000032 | 1170864 | 1173336 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010761
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 110 | 156 | 3.80E-11 |
| PF01535.19 | PPR | 187 | 209 | 0.14 |
| PF13041.5 | PPR_2 | 211 | 256 | 3.80E-10 |
| PF01535.19 | PPR | 286 | 312 | 0.035 |
| PF13041.5 | PPR_2 | 313 | 359 | 1.60E-12 |
| PF01535.19 | PPR | 387 | 411 | 0.0001 |
| PF14432.5 | DYW_deaminase | 487 | 608 | 1.80E-37 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.280 |
| SRR2545915 | Juvenile tuber | 0.920 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.430 |
| SRR5643514 | five period of Gastrodia elata | 1.320 | |
| SRR5643515 | five period of Gastrodia elata | 1.280 | |
| SRR5643524 | five period of Gastrodia elata | 0.930 | |
| SRR5643525 | five period of Gastrodia elata | 0.360 | |
| SRR5643528 | five period of Gastrodia elata | 0.130 | |
| SRR5643658 | five period of Gastrodia elata | 0.330 | |
| SRR5643659 | five period of Gastrodia elata | 2.040 | |
| SRR5643660 | five period of Gastrodia elata | 1.470 | |
| SRR5643661 | five period of Gastrodia elata | 2.320 | |
| SRR5643662 | five period of Gastrodia elata | 2.020 | |
| SRR5643663 | five period of Gastrodia elata | 1.780 | |
| SRR5643664 | five period of Gastrodia elata | 1.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.570 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.990 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.640 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.590 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.950 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.910 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.300 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.750 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.030 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.820 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.220 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.220 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.61 |
| Juven | Juvenile tuber | 1.20 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.22 | |
| Mother_Juven | Mother tuber of Juvenile | 0.18 |