Detail information of GWHGAAEX010769/evm.TU.scaffold_32.54
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 3.00E-127 | FOG: PPR repeat |
| nr | gi|743763964|ref|XP_010912182.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g80880, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|Q9SAH2|PP137_ARATH | 9.00E-128 | Pentatricopeptide repeat-containing protein At1g80880, mitochondrial (Precursor) |
| trEMBL | tr|M0TL35|M0TL35_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P26990_001} |
| TAIR | AT1G80880 | 3.00E-127 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000032 | 1480016 | 1482639 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010769
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 202 | 221 | 0.052 |
| PF13041.5 | PPR_2 | 267 | 312 | 4.80E-09 |
| PF13041.5 | PPR_2 | 336 | 381 | 2.80E-08 |
| PF01535.19 | PPR | 409 | 434 | 0.054 |
| PF01535.19 | PPR | 442 | 470 | 0.00029 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.390 |
| SRR2545915 | Juvenile tuber | 8.050 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.240 |
| SRR5643514 | five period of Gastrodia elata | 7.220 | |
| SRR5643515 | five period of Gastrodia elata | 6.670 | |
| SRR5643524 | five period of Gastrodia elata | 6.870 | |
| SRR5643525 | five period of Gastrodia elata | 4.550 | |
| SRR5643528 | five period of Gastrodia elata | 5.400 | |
| SRR5643658 | five period of Gastrodia elata | 4.850 | |
| SRR5643659 | five period of Gastrodia elata | 5.710 | |
| SRR5643660 | five period of Gastrodia elata | 8.460 | |
| SRR5643661 | five period of Gastrodia elata | 6.980 | |
| SRR5643662 | five period of Gastrodia elata | 6.560 | |
| SRR5643663 | five period of Gastrodia elata | 5.550 | |
| SRR5643664 | five period of Gastrodia elata | 6.740 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.260 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.110 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.770 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.660 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.610 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.890 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.820 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.590 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.010 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.260 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.950 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.950 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.23 |
| Juven | Juvenile tuber | 13.82 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.68 | |
| Mother_Juven | Mother tuber of Juvenile | 9.71 |