Detail information of GWHGAAEX010790/evm.TU.scaffold_32.83


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|521459753|ref|YP_008155477.1|5.00E-1650S ribosomal protein L18 [Sorangium cellulosum So0157-2]
KOGKOG18701.00E-15Ubiquitin C-terminal hydrolase
nrgi|695008578|ref|XP_009390888.1|5.37E-59PREDICTED: 50S ribosomal protein L18, chloroplastic [Musa acuminata subsp. malaccensis]
Swissprottr|Q8SAY0|RK18_ORYSJ2.00E-1650S ribosomal protein L18, chloroplastic (Precursor)
trEMBLtr|M0SB00|M0SB00_MUSAM2.00E-59Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P01820_001}
TAIRAT1G483501.00E-15Ribosomal L18p/L5e family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003230349303046649+
Transcript Sequence

Network for GWHGAAEX010790

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00861.21Ribosomal_L18p1102231.20E-17
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.580
SRR2545915Juvenile tuber6.920
SRP108465SRR5643513five period of Gastrodia elata4.580
SRR5643514five period of Gastrodia elata3.570
SRR5643515five period of Gastrodia elata2.840
SRR5643524five period of Gastrodia elata4.750
SRR5643525five period of Gastrodia elata2.040
SRR5643528five period of Gastrodia elata4.030
SRR5643658five period of Gastrodia elata2.570
SRR5643659five period of Gastrodia elata4.460
SRR5643660five period of Gastrodia elata4.080
SRR5643661five period of Gastrodia elata3.170
SRR5643662five period of Gastrodia elata4.660
SRR5643663five period of Gastrodia elata2.490
SRR5643664five period of Gastrodia elata3.910
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_14.200
SRR6049655Rhizomagastrodiae_C368-T10_good_13.480
SRR6049656Rhizomagastrodiae_C368-T07_good_14.220
SRR6049657Rhizomagastrodiae_C368-T07_good_14.700
SRR6049658Rhizomagastrodiae_C368-T04_good_13.450
SRR6049659Rhizomagastrodiae_C368-T04_good_15.840
SRR6049660Rhizomagastrodiae_C368-T01_good_13.870
SRR6049661Rhizomagastrodiae_C368-T04_good_14.160
SRR6049662Rhizomagastrodiae_C368-T01_good_15.470
SRR6049663Rhizomagastrodiae_C368-T01_good_16.040
SRR6049664Rhizomagastrodiae_C368-T10_good_15.000
SRR6049665Rhizomagastrodiae_C368-T10_good_15.000
SRP279888GastroGastrodia elata tuber 3.95
JuvenJuvenile tuber2.11
Mother_GastroMother tuber of Gastrodia elata 4.66
Mother_JuvenMother tuber of Juvenile 1.57