Gene detail

Detail information of GWHGAAEX010793/evm.TU.scaffold_32.92

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|431932957\|ref\|YP_007246002.1\|	2.00E-78	RNA methylase [Thioflavicoccus mobilis 8321]
KOG	KOG1513	0	Nuclear helicase MOP-3/SNO (DEAD-box superfamily)
nr	gi\|695051149\|ref\|XP_009413590.1\|	0	PREDICTED: protein strawberry notch isoform X2 [Musa acuminata subsp. malaccensis]
trEMBL	tr\|A0A061FIH0\|A0A061FIH0_THECC	0	RING/FYVE/PHD zinc finger superfamily protein isoform 1 {ECO:0000313\|EMBL:EOY14274.1}
TAIR	AT1G79350	0	RING/FYVE/PHD zinc finger superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000032	3320077	3416906	-

Transcript Sequence
>GWHTAAEX010793 ATGGGGAATCCATCTGGGCCGGCGGCGCCGCCTCCTCTTACGCCGCCTTTGCCTGGAAGCTGCCAAGTCCGGTGTGCGCGATGCCACGAGATTCTAACAGTGGCCCCCGGAATAACGGAGTTCAGCTGCCCCAAGTGCCAATTACCGCAGATGCTACCACCCGAACTCATCTTGACTGGGGGAGCCGCCCGCCGCCCGCCTCCCCAAGCACAGGGCATTGATCCGACCAAGATCCAGCTTCCCTGTGCCCGCTGTAAGGCTATTCTCAACGTACCTCACGGCCTCACCCGCTTCAATTGCCCACAGTGTGGCGTCGATCTCGCTGTCGACCTTACCAAGCTCCACCAGTACTTCTCTTCTGCTGGCTCTTTACTTCCCGGACTTCCCCAGGACATACCGGAAGAAACCAATGAGGTTGCAGTTGATGTTGAACGAGAAGAAGATCAAGGCGGTGCAGTTGGAGAGACATTTATAGACTATCGCCCTCCAAAATTATCTCTTGGTGATCCTCACCCAGATCCTGTTGTGGAAACATCTTCCTTGTCAGCTGTGCAACCTCCTGAGCCTACTTACTCTCCAAAAATAATGGATGAGCTTGAGAAATCTAAGGCTTTGTCTTGCTTACAGATTGAGACAATAGTTTATGCTTGCCAGAGACATCTTCAACACCTCCAAAATGGTACAAGAGCTGGGTTTTTTATTGGTGATGGTGCTGGTGTGGGTAAAGGTCGAACTATTGCTGGATTGATATGGGAGAACTGGCAGCACCGAAAGCAGAAGGCACTGTGGATTTCAGTTGGTTCAGATCTAAAGTTTGATGCGCGAAGAGACCTAGATGACGTGGGTGCGGAATGCATTGAAGTACATGCTTTGAATAAGCTTCCTTACTCAAAGCTGGATTCCAAGGCTGTTGGCATCAGGGATGGTGTGATATTCCTAACATACAACAGCCTCATTGCATCATCTGAGAAAGGCCGTTCCCGCTTACAGCAGCTGCTACAGTGGTTTGGGTCTGATTTTGATGGTCTTATAGTGTTTGATGAGTGCCACAAGGCCAAAAATCTAATTCCAGAAGCAGGAGGGCAGGCTACTCGGACAGGGGAAGCTGTACTCGAGCTACAGGCTCGCCTACCTGAAGCTCGAGTTATTTACTGTTCAGCAACCGGTGCATCTGAGCCTCGCAACATGGGTTATATGGTTCGGCTTGGACTTTGGGGAGATGGAACATGTTTTGCGAGATTTCATGATTTCTTAGGGGCTCTTGATAAAGGTGGTGTAGGAGCATTAGAACTTGTTGCAATGGATATGAAGGCAAGGGGCATGTATGTTTGCCGTACATTAAGTTATAAAGGAGCAGAGTTTGAAGTGATTGAGGCCCCCTTGGAGGAAAAAATGATGGATATGTATACAAAGGCAGCAGAATTCTGGGCAGAGTTACGAGTTGAACTTTTATCTGCAAGTGCATTCCTTCCAGATGAAAAACCCAATTCAAGTCAGGTGTGGCGCTTATACTGGGCCAATCATCAGCGCTTCTTCAGGCATATGTGCATGGCAGCTAAAGTGCCTGCTGCTGTGAGATTAGCTAAGCAGGCATTAGCAAATAATAAATGTGTAGTCATTGGCCTTCAGAGTACTGGAGAGGCTCGAACTGAGGAAGCTGTGACAAAATATGGTCTAGAACTTGATGACTTCATCTCAGGACCACGGGAGGTCTTGTTGAAATTGGTGGAGGAGAGCTATCCTTTGCCTTTAAAGCCTGACGTAACTCTACGGGATCAGACTGTGAAAGAGCTACACCGGAAGAGACATTCTGCCACTCAAGATATATCATATAAAGGGAGATCTAGAAAAGTTTCAAAATGGAATGCTGAAACTGATGGTTGTGAGAGTTATGAAGAATCTCAAACTGATTCTGATCATGAATCGTCAGAATCTGATGAGGAGTTTCAGATATGTGAAATATGCAACAGCGAGGAGGAAAAAAAGCTTTTGCTTCGCTGCTCATGTTGTCGACAACAAGTTCATCCTGCTTGTTTAGTGCCACCTTGGATGGATTTAATTCCTGCTGAATGGTCATGTTACTCATGCAAGGAAAAAACTGAAGAGTATCTTCAGGCTAGGGATACCTATGTTGCAGAACTACTAAAAAGATATGAGGTAGCAAATGATCGAAAGTTGAAGATTTTGGATATAATAAAGTTTTTGGATCTTCCAAATAATCCCCTCGATGACTTAATTGATCAGCTCGGAGGCCCTGAAAATGTGGCAGAGATGACTGGTAGAAAGGGTATGCTTGTGCGAGTGTCCGGTGGAAAAGGTGTTGTTTACCAGGCACGAAACACGAAAGAAGTAGCATTAGAAATGGTAAATATGCATGAAAAAAAATTATTTATGGATGGTGACAAGTTAGTTGCCATCATATCGGAAGCTGGCTCAGCTGGCGTTTCTTTGCAAGCTGATAAAAGGGTGTTAAATCAGAGGAGACGAGTTCATTTAACTCTCGAACTTCCATGGAGTGCAGATCGTGCAATTCAACAATTTGGGAGGACCCATCGATCAAACCAAGCATCTGCTCCTGAGTATAGACTTCTTTTCACAAATCTTGGTGGTGAGCGAAGGTTTGCATCTATTGTTGCCAAGAGACTAGAGTCTCTTGGAGCTCTAACACAGGGAGATCGCAGAGCAGGACCTTCATTGAGTGCTTACAATTACGATAGTTACTATGGAAAGAAAGCGCTTATGACAATGTACAAAGGGATAATGGAACAGGATCTTTTGCCTGTTGTACCTCCTGGATGCTCATCTGACAATACACAAAGTGTTCAAGAGTTTATTATTAAAGCAAAAGCTGCTCTTATATCTGTTGGAATTGTGAGAGATACTATTCTATGCAATGGGAAAGATGGAAACAAACTTTCTGGTCGTATTGTGGATTCAGATATGCATGATGTTGGGCGCTTTTTAAATAGACTTTTGGGCTTGCCTCCCGATATTCAGAATAGGCTTTTTGAGCTTTTTATCAATATCCTTGAACTGCTTGTTCACAATGCTCGAAGCGAGGGACAATTTGACTCTGGAATAGTTGATATAAAAGCTAATATTATTGAACAACGAAGATCACCCAAGATGGTTCATGTTGATAATCTTTCTGGTGCTTCAACTGTACTGTTCACAATCACAGTAGACCGTGGCATAACCTGGCAGTTTGCAAAAAATGTAATTGATGAGAGGAAGAAAAATGAGCTTTGCTCTACAAATGATGGCTTTTATGAGTCTAGAAGGGAGTGGATGGGTAGAAGGCATTACATATTAGCTTTGGAAGGTTCCTCAGCAGGGATGTACAAAATTTTTCGTCCTGCAATTGGCGAAGTATTAAGGGAAATGCCTCTGGCTGAGCTGACAAACAAATATAGAAAGGTTTCTTCAATTGAAAAGGCCAATATAGGTTGGGTAGAAGAGTACGATGTATCATCTAAACAGTGTATGCATGGGTCTAAATGTAAACTTGGTGACTACTGTACTGTTGGAAGAAGGCTGCAAGAAGTCAATATCTTAGGTGGACTCATTCTTCCAGTTTGGGGAACTATAGAAAAGGCACTATCTAAACAAGCTCGCCAAAGTCACAAGCGTCTTCGTGTTGTTCGATTAGAGACAACAGATGATCATCAACGCATAGTGGGACTTTTAATTCCAAATGCAGCCGTGGAATCCGTGCTCCAAGATTTATCGTGGGTTCAAGATGTTGACGAATGA

Network for GWHGAAEX010793

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13872.5	AAA_34	170	470	5.20E-134
PF13871.5	Helicase_C_4	740	1029	5.80E-109

Protein Sequence

>GWHPAAEX010793
MGNPSGPAAPPPLTPPLPGSCQVRCARCHEILTVAPGITEFSCPKCQLPQMLPPELILTGGAARRPPPQAQGIDPTKIQLPCARCKAILNVPHGLTRFNCPQCGVDLAVDLTKLHQYFSSAGSLLPGLPQDIPEETNEVAVDVEREEDQGGAVGETFIDYRPPKLSLGDPHPDPVVETSSLSAVQPPEPTYSPKIMDELEKSKALSCLQIETIVYACQRHLQHLQNGTRAGFFIGDGAGVGKGRTIAGLIWENWQHRKQKALWISVGSDLKFDARRDLDDVGAECIEVHALNKLPYSKLDSKAVGIRDGVIFLTYNSLIASSEKGRSRLQQLLQWFGSDFDGLIVFDECHKAKNLIPEAGGQATRTGEAVLELQARLPEARVIYCSATGASEPRNMGYMVRLGLWGDGTCFARFHDFLGALDKGGVGALELVAMDMKARGMYVCRTLSYKGAEFEVIEAPLEEKMMDMYTKAAEFWAELRVELLSASAFLPDEKPNSSQVWRLYWANHQRFFRHMCMAAKVPAAVRLAKQALANNKCVVIGLQSTGEARTEEAVTKYGLELDDFISGPREVLLKLVEESYPLPLKPDVTLRDQTVKELHRKRHSATQDISYKGRSRKVSKWNAETDGCESYEESQTDSDHESSESDEEFQICEICNSEEEKKLLLRCSCCRQQVHPACLVPPWMDLIPAEWSCYSCKEKTEEYLQARDTYVAELLKRYEVANDRKLKILDIIKFLDLPNNPLDDLIDQLGGPENVAEMTGRKGMLVRVSGGKGVVYQARNTKEVALEMVNMHEKKLFMDGDKLVAIISEAGSAGVSLQADKRVLNQRRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRLLFTNLGGERRFASIVAKRLESLGALTQGDRRAGPSLSAYNYDSYYGKKALMTMYKGIMEQDLLPVVPPGCSSDNTQSVQEFIIKAKAALISVGIVRDTILCNGKDGNKLSGRIVDSDMHDVGRFLNRLLGLPPDIQNRLFELFINILELLVHNARSEGQFDSGIVDIKANIIEQRRSPKMVHVDNLSGASTVLFTITVDRGITWQFAKNVIDERKKNELCSTNDGFYESRREWMGRRHYILALEGSSAGMYKIFRPAIGEVLREMPLAELTNKYRKVSSIEKANIGWVEEYDVSSKQCMHGSKCKLGDYCTVGRRLQEVNILGGLILPVWGTIEKALSKQARQSHKRLRVVRLETTDDHQRIVGLLIPNAAVESVLQDLSWVQDVDE

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	63.840
SRP064423	SRR2545915	Juvenile tuber	83.890
SRP108465	SRR5643513	five period of Gastrodia elata	24.910
	SRR5643514	five period of Gastrodia elata	25.050
	SRR5643515	five period of Gastrodia elata	25.930
	SRR5643524	five period of Gastrodia elata	24.070
	SRR5643525	five period of Gastrodia elata	43.740
	SRR5643528	five period of Gastrodia elata	35.720
	SRR5643658	five period of Gastrodia elata	61.110
	SRR5643659	five period of Gastrodia elata	50.080
	SRR5643660	five period of Gastrodia elata	61.850
	SRR5643661	five period of Gastrodia elata	44.500
	SRR5643662	five period of Gastrodia elata	65.770
	SRR5643663	five period of Gastrodia elata	65.540
	SRR5643664	five period of Gastrodia elata	75.630
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	38.740
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.360
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	30.630
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	44.550
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	45.930
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	56.600
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.720
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	41.430
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	27.740
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	31.040
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	22.860
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	22.860
SRP279888	Gastro	Gastrodia elata tuber	85.73
	Juven	Juvenile tuber	52.23
	Mother_Gastro	Mother tuber of Gastrodia elata	26.21
	Mother_Juven	Mother tuber of Juvenile	41.19