Detail information of GWHGAAEX010796/evm.TU.scaffold_32.97
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743866280|ref|XP_010905026.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g30700 [Elaeis guineensis] |
| Swissprot | tr|Q9SUH6|PP341_ARATH | 0 | Pentatricopeptide repeat-containing protein At4g30700 |
| trEMBL | tr|I1H0A3|I1H0A3_BRADI | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI1G47160.1} |
| TAIR | AT4G30700 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000032 | 3794058 | 3801697 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010796
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 171 | 200 | 0.029 |
| PF01535.19 | PPR | 273 | 301 | 0.012 |
| PF01535.19 | PPR | 345 | 370 | 0.36 |
| PF13041.5 | PPR_2 | 372 | 418 | 5.10E-12 |
| PF13041.5 | PPR_2 | 471 | 519 | 3.10E-09 |
| PF14432.5 | DYW_deaminase | 646 | 770 | 3.20E-41 |
| PF12043.7 | DUF3527 | 826 | 915 | 2.10E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.550 |
| SRR2545915 | Juvenile tuber | 0.270 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.320 |
| SRR5643514 | five period of Gastrodia elata | 2.070 | |
| SRR5643515 | five period of Gastrodia elata | 1.970 | |
| SRR5643524 | five period of Gastrodia elata | 2.730 | |
| SRR5643525 | five period of Gastrodia elata | 0.870 | |
| SRR5643528 | five period of Gastrodia elata | 0.450 | |
| SRR5643658 | five period of Gastrodia elata | 0.660 | |
| SRR5643659 | five period of Gastrodia elata | 1.440 | |
| SRR5643660 | five period of Gastrodia elata | 1.380 | |
| SRR5643661 | five period of Gastrodia elata | 1.650 | |
| SRR5643662 | five period of Gastrodia elata | 1.730 | |
| SRR5643663 | five period of Gastrodia elata | 0.960 | |
| SRR5643664 | five period of Gastrodia elata | 1.340 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.520 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.030 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.710 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.150 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.270 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.680 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.900 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.010 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.300 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.300 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.85 |
| Juven | Juvenile tuber | 3.44 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.36 | |
| Mother_Juven | Mother tuber of Juvenile | 0.73 |