Detail information of GWHGAAEX010801/evm.TU.scaffold_32.108
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743785862|ref|XP_010922022.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g03560, mitochondrial, partial [Elaeis guineensis] |
| Swissprot | tr|Q9LR67|PPR9_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g03560, mitochondrial (Precursor) |
| trEMBL | tr|M0SUL7|M0SUL7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P00880_001} |
| TAIR | AT1G03560 | 0 | Pentatricopeptide repeat (PPR-like) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000032 | 4246508 | 4248349 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010801
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 152 | 178 | 0.81 |
| PF01535.19 | PPR | 184 | 212 | 0.0026 |
| PF12854.6 | PPR_1 | 213 | 244 | 2.00E-10 |
| PF17177.3 | PPR_long | 267 | 407 | 1.60E-12 |
| PF13041.5 | PPR_2 | 423 | 472 | 8.20E-15 |
| PF01535.19 | PPR | 535 | 559 | 0.016 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.960 |
| SRR2545915 | Juvenile tuber | 6.230 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.860 |
| SRR5643514 | five period of Gastrodia elata | 7.680 | |
| SRR5643515 | five period of Gastrodia elata | 8.830 | |
| SRR5643524 | five period of Gastrodia elata | 9.150 | |
| SRR5643525 | five period of Gastrodia elata | 11.510 | |
| SRR5643528 | five period of Gastrodia elata | 9.110 | |
| SRR5643658 | five period of Gastrodia elata | 9.090 | |
| SRR5643659 | five period of Gastrodia elata | 15.080 | |
| SRR5643660 | five period of Gastrodia elata | 12.130 | |
| SRR5643661 | five period of Gastrodia elata | 13.690 | |
| SRR5643662 | five period of Gastrodia elata | 14.140 | |
| SRR5643663 | five period of Gastrodia elata | 12.290 | |
| SRR5643664 | five period of Gastrodia elata | 12.290 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.090 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.810 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.390 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.590 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.180 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.230 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.200 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.580 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.630 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.770 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.770 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.24 |
| Juven | Juvenile tuber | 17.53 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.24 | |
| Mother_Juven | Mother tuber of Juvenile | 18.45 |