Detail information of GWHGAAEX010806/evm.TU.scaffold_32.115
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 7.00E-161 | FOG: PPR repeat |
| nr | gi|672196453|ref|XP_008776808.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Phoenix dactylifera] |
| Swissprot | tr|Q9LS72|PP261_ARATH | 4.00E-122 | Pentatricopeptide repeat-containing protein At3g29230 |
| trEMBL | tr|B9HJ37|B9HJ37_POPTR | 0 | Pentatricopeptide repeat-containing family protein {ECO:0000313|EMBL:EEE88829.1} |
| TAIR | AT1G13410 | 7.00E-161 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000032 | 5027492 | 5039743 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010806
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 100 | 127 | 0.017 |
| PF01535.19 | PPR | 128 | 157 | 0.49 |
| PF01535.19 | PPR | 160 | 187 | 0.00013 |
| PF01535.19 | PPR | 221 | 247 | 0.034 |
| PF13041.5 | PPR_2 | 320 | 368 | 7.80E-08 |
| PF01535.19 | PPR | 395 | 420 | 0.033 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.870 |
| SRR2545915 | Juvenile tuber | 1.810 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.190 |
| SRR5643514 | five period of Gastrodia elata | 3.220 | |
| SRR5643515 | five period of Gastrodia elata | 2.280 | |
| SRR5643524 | five period of Gastrodia elata | 2.310 | |
| SRR5643525 | five period of Gastrodia elata | 0.560 | |
| SRR5643528 | five period of Gastrodia elata | 0.250 | |
| SRR5643658 | five period of Gastrodia elata | 0.600 | |
| SRR5643659 | five period of Gastrodia elata | 5.260 | |
| SRR5643660 | five period of Gastrodia elata | 3.580 | |
| SRR5643661 | five period of Gastrodia elata | 4.290 | |
| SRR5643662 | five period of Gastrodia elata | 3.940 | |
| SRR5643663 | five period of Gastrodia elata | 3.530 | |
| SRR5643664 | five period of Gastrodia elata | 3.940 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.610 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.440 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.250 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.750 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.800 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.970 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.090 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.020 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.470 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.470 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.31 |
| Juven | Juvenile tuber | 2.24 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.91 | |
| Mother_Juven | Mother tuber of Juvenile | 0.62 |