Detail information of GWHGAAEX010808/evm.TU.scaffold_32.119
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|256371664|ref|YP_003109488.1| | 1.00E-14 | serine/threonine protein kinase [Acidimicrobium ferrooxidans DSM 10331] |
| KOG | KOG0670 | 0 | U4/U6-associated splicing factor PRP4 |
| nr | gi|672107709|ref|XP_008781133.1| | 0 | PREDICTED: serine/threonine-protein kinase prpf4B [Phoenix dactylifera] |
| Swissprot | tr|P51568|AFC3_ARATH | 4.00E-44 | Serine/threonine-protein kinase AFC3 |
| trEMBL | tr|M0RZA5|M0RZA5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P12470_001} |
| TAIR | AT3G25840 | 0 | Protein kinase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000032 | 5846254 | 5859822 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010808
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.24 | Pkinase | 740 | 1054 | 6.90E-46 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | CMGC_DYRK-PRP4 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 83.750 |
| SRR2545915 | Juvenile tuber | 82.540 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 33.430 |
| SRR5643514 | five period of Gastrodia elata | 25.090 | |
| SRR5643515 | five period of Gastrodia elata | 26.320 | |
| SRR5643524 | five period of Gastrodia elata | 24.860 | |
| SRR5643525 | five period of Gastrodia elata | 36.620 | |
| SRR5643528 | five period of Gastrodia elata | 29.830 | |
| SRR5643658 | five period of Gastrodia elata | 33.950 | |
| SRR5643659 | five period of Gastrodia elata | 35.970 | |
| SRR5643660 | five period of Gastrodia elata | 38.960 | |
| SRR5643661 | five period of Gastrodia elata | 35.630 | |
| SRR5643662 | five period of Gastrodia elata | 42.350 | |
| SRR5643663 | five period of Gastrodia elata | 41.080 | |
| SRR5643664 | five period of Gastrodia elata | 42.530 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 43.890 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 39.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 37.060 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 52.750 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 55.530 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 72.120 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 49.130 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 50.220 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 32.240 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 39.310 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 30.420 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 30.420 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 36.62 |
| Juven | Juvenile tuber | 48.68 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 28.61 | |
| Mother_Juven | Mother tuber of Juvenile | 51.08 |