Detail information of GWHGAAEX010816/evm.TU.scaffold_323.6


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743840838|ref|XP_010937378.1|0PREDICTED: protein SCAI homolog [Elaeis guineensis]
trEMBLtr|M0RL52|M0RL52_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P24770_001}
TAIRAT4G400500Protein of unknown function (DUF3550/UPF0682)

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000318111448128260-
Transcript Sequence

Network for GWHGAAEX010816

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12070.7SCAI225503.00E-185
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006351Biological Processtranscription, DNA-templated
GO:0003714Molecular Functiontranscription corepressor activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.410
SRR2545915Juvenile tuber11.620
SRP108465SRR5643513five period of Gastrodia elata10.860
SRR5643514five period of Gastrodia elata11.820
SRR5643515five period of Gastrodia elata9.340
SRR5643524five period of Gastrodia elata10.590
SRR5643525five period of Gastrodia elata8.800
SRR5643528five period of Gastrodia elata8.570
SRR5643658five period of Gastrodia elata8.910
SRR5643659five period of Gastrodia elata7.960
SRR5643660five period of Gastrodia elata8.790
SRR5643661five period of Gastrodia elata8.460
SRR5643662five period of Gastrodia elata9.670
SRR5643663five period of Gastrodia elata9.660
SRR5643664five period of Gastrodia elata9.010
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.360
SRR6049655Rhizomagastrodiae_C368-T10_good_18.960
SRR6049656Rhizomagastrodiae_C368-T07_good_114.300
SRR6049657Rhizomagastrodiae_C368-T07_good_111.360
SRR6049658Rhizomagastrodiae_C368-T04_good_114.870
SRR6049659Rhizomagastrodiae_C368-T04_good_114.510
SRR6049660Rhizomagastrodiae_C368-T01_good_112.320
SRR6049661Rhizomagastrodiae_C368-T04_good_112.380
SRR6049662Rhizomagastrodiae_C368-T01_good_112.930
SRR6049663Rhizomagastrodiae_C368-T01_good_114.370
SRR6049664Rhizomagastrodiae_C368-T10_good_115.590
SRR6049665Rhizomagastrodiae_C368-T10_good_115.590
SRP279888GastroGastrodia elata tuber 11.92
JuvenJuvenile tuber15.34
Mother_GastroMother tuber of Gastrodia elata 16.91
Mother_JuvenMother tuber of Juvenile 14.41