Detail information of GWHGAAEX010823/evm.TU.scaffold_325.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1077 | 0 | Vesicle coat complex AP-2, alpha subunit |
| nr | gi|743827961|ref|XP_010933729.1| | 0 | PREDICTED: AP-2 complex subunit alpha-1-like [Elaeis guineensis] |
| Swissprot | tr|Q8LPK4|AP2A2_ARATH | 0 | AP-2 complex subunit alpha-2 |
| trEMBL | tr|M0RW85|M0RW85_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P01770_001} |
| TAIR | AT5G22780 | 0 | Adaptor protein complex AP-2, alpha subunit |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000321 | 70123 | 128235 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010823
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01602.19 | Adaptin_N | 27 | 580 | 5.40E-111 |
| PF02883.19 | Alpha_adaptinC2 | 753 | 849 | 2.30E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11824 | AP2A | Endocytosis | map04144 |
| Endocrine and other factor-regulated calcium reabsorption | map04961 | ||
| Synaptic vesicle cycle | map04721 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0015031 | Biological Process | protein transport |
| GO:0016192 | Biological Process | vesicle-mediated transport |
| GO:0072583 | Biological Process | clathrin-mediated endocytosis |
| GO:0035615 | Molecular Function | clathrin adaptor activity |
| GO:0030122 | Cellular Component | AP-2 adaptor complex |
| GO:0030117 | Cellular Component | membrane coat |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 52.390 |
| SRR2545915 | Juvenile tuber | 38.180 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 28.010 |
| SRR5643514 | five period of Gastrodia elata | 26.650 | |
| SRR5643515 | five period of Gastrodia elata | 30.070 | |
| SRR5643524 | five period of Gastrodia elata | 27.040 | |
| SRR5643525 | five period of Gastrodia elata | 28.150 | |
| SRR5643528 | five period of Gastrodia elata | 32.800 | |
| SRR5643658 | five period of Gastrodia elata | 33.660 | |
| SRR5643659 | five period of Gastrodia elata | 26.960 | |
| SRR5643660 | five period of Gastrodia elata | 26.200 | |
| SRR5643661 | five period of Gastrodia elata | 24.510 | |
| SRR5643662 | five period of Gastrodia elata | 28.840 | |
| SRR5643663 | five period of Gastrodia elata | 26.820 | |
| SRR5643664 | five period of Gastrodia elata | 24.320 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 36.470 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 32.740 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 32.160 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 36.390 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 38.580 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 33.410 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 35.360 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 35.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 34.640 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 37.170 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 37.170 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 27.61 |
| Juven | Juvenile tuber | 32.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 39.72 | |
| Mother_Juven | Mother tuber of Juvenile | 49.50 |