Detail information of GWHGAAEX010827/evm.TU.scaffold_3262.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|295696775|ref|YP_003590013.1| | 4.00E-43 | urease subunit alpha [Kyrpidia tusciae DSM 2912] |
| nr | gi|743814670|ref|XP_010930125.1| | 7.98E-82 | PREDICTED: urease isoform X3 [Elaeis guineensis] |
| Swissprot | tr|B9GCH9|UREA_ORYSJ | 6.00E-69 | Urease |
| trEMBL | tr|M0TYE3|M0TYE3_MUSAM | 3.00E-75 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P07840_001} |
| TAIR | AT1G67550 | 5.00E-66 | urease |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00003254 | 301 | 1410 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010827
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00449.19 | Urease_alpha | 77 | 190 | 3.70E-50 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01427 | URE | Metabolic pathways | map01100 |
| Microbial metabolism in diverse environments | map01120 | ||
| Purine metabolism | map00230 | ||
| Arginine biosynthesis | map00220 | ||
| Atrazine degradation | map00791 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016810 | Molecular Function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.940 |
| SRR2545915 | Juvenile tuber | 10.920 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.070 |
| SRR5643514 | five period of Gastrodia elata | 9.000 | |
| SRR5643515 | five period of Gastrodia elata | 8.620 | |
| SRR5643524 | five period of Gastrodia elata | 8.040 | |
| SRR5643525 | five period of Gastrodia elata | 34.070 | |
| SRR5643528 | five period of Gastrodia elata | 19.470 | |
| SRR5643658 | five period of Gastrodia elata | 30.780 | |
| SRR5643659 | five period of Gastrodia elata | 6.510 | |
| SRR5643660 | five period of Gastrodia elata | 8.970 | |
| SRR5643661 | five period of Gastrodia elata | 6.350 | |
| SRR5643662 | five period of Gastrodia elata | 12.180 | |
| SRR5643663 | five period of Gastrodia elata | 6.570 | |
| SRR5643664 | five period of Gastrodia elata | 6.830 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.730 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.090 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.450 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.350 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 21.320 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.130 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.680 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.140 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.53 |
| Juven | Juvenile tuber | 16.45 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 20.24 | |
| Mother_Juven | Mother tuber of Juvenile | 23.88 |