Detail information of GWHGAAEX010835/evm.TU.scaffold_328.2
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0851 | 0 | Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins |
| nr | gi|743837659|ref|XP_010936470.1| | 0 | PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q10Q08|RFA1B_ORYSJ | 0 | Replication protein A 70 kDa DNA-binding subunit B |
| trEMBL | tr|M0SNV1|M0SNV1_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P14360_001} |
| TAIR | AT5G08020 | 0 | RPA70-kDa subunit B |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000330 | 156234 | 161341 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010835
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04057.11 | Rep-A_N | 36 | 137 | 8.40E-25 |
| PF01336.24 | tRNA_anti-codon | 201 | 287 | 2.70E-09 |
| PF16900.4 | REPA_OB_2 | 319 | 415 | 1.30E-22 |
| PF08646.9 | Rep_fac-A_C | 479 | 623 | 1.50E-41 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K07466 | RFA1, RPA1, rpa | DNA replication | map03030 |
| Nucleotide excision repair | map03420 | ||
| Mismatch repair | map03430 | ||
| Homologous recombination | map03440 | ||
| Fanconi anemia pathway | map03460 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006281 | Biological Process | DNA repair |
| GO:0006310 | Biological Process | DNA recombination |
| GO:0006260 | Biological Process | DNA replication |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.330 |
| SRR2545915 | Juvenile tuber | 7.170 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.610 |
| SRR5643514 | five period of Gastrodia elata | 13.330 | |
| SRR5643515 | five period of Gastrodia elata | 8.660 | |
| SRR5643524 | five period of Gastrodia elata | 10.780 | |
| SRR5643525 | five period of Gastrodia elata | 2.380 | |
| SRR5643528 | five period of Gastrodia elata | 3.300 | |
| SRR5643658 | five period of Gastrodia elata | 2.940 | |
| SRR5643659 | five period of Gastrodia elata | 7.450 | |
| SRR5643660 | five period of Gastrodia elata | 7.300 | |
| SRR5643661 | five period of Gastrodia elata | 5.630 | |
| SRR5643662 | five period of Gastrodia elata | 4.140 | |
| SRR5643663 | five period of Gastrodia elata | 5.820 | |
| SRR5643664 | five period of Gastrodia elata | 1.800 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.130 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.810 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 22.060 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.980 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.670 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.090 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.170 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.680 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.310 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 29.280 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 29.280 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.80 |
| Juven | Juvenile tuber | 5.66 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.74 | |
| Mother_Juven | Mother tuber of Juvenile | 4.19 |