Gene detail

Detail information of GWHGAAEX010836/evm.TU.scaffold_33.1

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0800	3.00E-58	FOG: Predicted E3 ubiquitin ligase
nr	gi\|720098678\|ref\|XP_010247703.1\|	8.41E-79	PREDICTED: uncharacterized protein LOC104590678 [Nelumbo nucifera]
Swissprot	tr\|O49500\|MBR2_ARATH	3.00E-39	E3 ubiquitin-protein ligase MBR2
trEMBL	tr\|A0A067KEL6\|A0A067KEL6_JATCU	7.00E-78	Uncharacterized protein {ECO:0000313\|EMBL:KDP33448.1}
TAIR	AT5G10650	3.00E-58	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000044	44331	56144	-

Transcript Sequence
>GWHTAAEX010836 ATTTGTTATTGAGAAAAAGCCGCTAGTGATTTACTCCAAGAAGTTTATCTCGTTCTTTAGACGCCGCTCTGCTCGTTCCCACGCCATAGCGATCGTTTCGTGTTCCTCGTACGTTCCGGGATCAAACTGCCGCAGAGAATTGCTGCTACATTTACTTGGTGGAATTTCTGCCCATTAAAAAAGATGAATCTCCTTTGTTGAATATCTTATTCATGAAGGTTCTTTATAGAAGAAGTTTTGACATTTGTCTTCCATGGGTGATCATGCTGAGAAAAACCGAGCAGGTGGGACTGGATTTTCTGAAAAAGGTTCAGGTCTTTCTTTTAGAGAGACAAATAATGAGGAGAGAAACTATCATCACCTGAATCGCTCTGGGTGCATCTCCCGGTCTAATTTAACAGCTAAAAGTACACATAATAGCAGTTATGAGAAACTCAAAAATTTGGAACACCCTTTGCGCTTTAGAAGCAGCAATCCCAGCGCTGCGAGTTCTTCCAAATCATTTTCTTCGAGCAGCAGTTCGGCTTTTTTTTCTCATGATAGGAAGAATGGAAAATTTTTAGAGGAAGCAAATACTGCTGAATTTGGTAATGGACAAGGCGAGAATCATGATGGGTTGCACATTGATTTAAAGTATCGTGAAAGAAAGAAAGAGGTCGATTGTTCTGGTCTTAATTCACCAGTTCTTCACAGATTTCCAGCTAATTCGATTAAAACGTGGAGTAGTTCTAAAGTTAAATCTTCCAGCAAAAGTGGCAAACAAATCATTCAATCATCTGCCAATTCTTCTCAAAACAATGTAAATCCACCCTTACGCCAAGCTTCTGTACCAAGAAATGCTGTTCAAATGACTAAATCTATTCCACAGTGTGCAATTGCTAGACCACAGAGGCATGTTTTGAAAAACCTTGGTTGTGGGTCAATTTCTGATGCCCTTCATTCCAGTTCTTCTTCTAGTGGACATAATAAAAGAGCTTATTCACTCGGAAACAAATTTCATGATGGAGAAGGCTCTTCAAGTGGAAGACCATCATATGAAGAGCAGAAATTCCTTGAAGATGCTTCAATAAGAACCAGACGTCAATACAACAACAGGGATGCTAAAGTTCCTGTTAGAACTTGCCTGAGTACGGGAGGGTGGAGTAGCAAAATGAGATCAAGTGAGCAAGAAGATGAACATTATCAACTGCCTGAGCCTATTCTGTTCCCAAGAAGGCTCAATGCTCCATTAAGAATTTCTGGTTTTTCTCAAGAGAGGCCTCCAATGTCATTTGATTTTTCATACATTTCACATGCTGGAAGACCGCGGTCTAGTACCCCATGTTCACAACGTAGGGAAGTTGCTCATTCTGATGATGGAGATGATTATCTTCACACAATCATGGAAGGAGTTGCTGAGGTTTTGCAGGTTCTGGAGAGGGTTGAACATGATGTGGGGTTGACAGATGAGGAACTTATGATGTTAGAAACCAGCATATTGGAAGGTTTTAGCTTATATGATCAGCATAGAGACATGAGATTAGATATAGATAACATGTCATATGAGGAAATTTTAGCTTTGGAGGAGAAGATGGGATCTGTGAGCACCGCCCTTACTGAAGAGGCGCTTTCAAAATGTATCAAGAAAAGCTCATACGGCACAAGCTTCCTTCGTATTCCAGGGATCTCTAGCCATGGTGATGATTTTAAGTGTAGCATTTGCCAGGAAGAATACAAGGTTGGGGAAGAGTTGGGAAGGCTTCGATGCAATCATCATTATCACGCCGCTTGCGTTCAACAATGGCTAAAGTTGAAGAATTGGTGCCCCATCTGCAAAGCTCCGGCACTGCTTCCCTAAACCCACATATATATATATATAACATTTCTTGATTTTTTACTATGGTTCCATCAAAGAAAATTTAGTTTCCTGTAGAACATAAACATTCACAAAATGTTCAATTAAAATAACTTGCATCTGCATTTATTATTGAAATAGAAATGAAAATGATAAAAAGATCAACTCGGTTTGGAGCAATGATGCTCGGACCCGCATTGTGCCGGGATACTTTTTTTTGAACAGCACTAAGCATAAAGAGCTGCATAAGTAAATAGAGCAGCATAAAGCAGTACTTGGCAGCAAGCAGAGTTCAGTTCATACAAATTCCAGGCCAGGCGTTAAAAGCTACCACCAATTCAGAAGACAGTACAATGAATCACACAAATGATACTGTTTTTGTATAATATTAAGCATTGTTATGATTCCTTTTAATTTTAATTGGGATGTTAAATGGTTAAAGTTGGGTGTAGAATAATGTGCTTGGTATGTAAATTATAAAGTTTTTGGCG

Network for GWHGAAEX010836

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.5	zf-RING_2	479	521	5.40E-11

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.250
SRP064423	SRR2545915	Juvenile tuber	17.440
SRP108465	SRR5643513	five period of Gastrodia elata	12.220
	SRR5643514	five period of Gastrodia elata	10.950
	SRR5643515	five period of Gastrodia elata	10.840
	SRR5643524	five period of Gastrodia elata	11.430
	SRR5643525	five period of Gastrodia elata	8.400
	SRR5643528	five period of Gastrodia elata	10.270
	SRR5643658	five period of Gastrodia elata	9.530
	SRR5643659	five period of Gastrodia elata	10.090
	SRR5643660	five period of Gastrodia elata	8.960
	SRR5643661	five period of Gastrodia elata	9.550
	SRR5643662	five period of Gastrodia elata	10.230
	SRR5643663	five period of Gastrodia elata	10.470
	SRR5643664	five period of Gastrodia elata	11.700
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.760
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.880
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.710
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.530
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.850
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.850
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.410
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.740
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.830
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.760
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.370
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.370
SRP279888	Gastro	Gastrodia elata tuber	13.39
	Juven	Juvenile tuber	14.42
	Mother_Gastro	Mother tuber of Gastrodia elata	18.97
	Mother_Juven	Mother tuber of Juvenile	20.54