Detail information of GWHGAAEX010857/evm.TU.scaffold_33.23
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|146302897|ref|YP_001190213.1| | 2.00E-12 | 50S ribosomal protein L30 [Metallosphaera sedula DSM 5348] |
| KOG | KOG3184 | 4.00E-148 | 60S ribosomal protein L7 |
| nr | gi|695063769|ref|XP_009420403.1| | 8.97E-153 | PREDICTED: 60S ribosomal protein L7-2 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P60040|RL72_ARATH | 1.00E-148 | 60S ribosomal protein L7-2 |
| trEMBL | tr|M0RFV2|M0RFV2_MUSAM | 3.00E-153 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P06250_001} |
| TAIR | AT2G01250 | 4.00E-148 | Ribosomal protein L30/L7 family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000044 | 554867 | 563981 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010857
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08079.11 | Ribosomal_L30_N | 11 | 79 | 4.30E-28 |
| PF00327.19 | Ribosomal_L30 | 86 | 136 | 2.90E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02937 | RP-L7e, RPL7 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000463 | Biological Process | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0022625 | Cellular Component | cytosolic large ribosomal subunit |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 310.830 |
| SRR2545915 | Juvenile tuber | 343.260 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 320.900 |
| SRR5643514 | five period of Gastrodia elata | 346.410 | |
| SRR5643515 | five period of Gastrodia elata | 318.260 | |
| SRR5643524 | five period of Gastrodia elata | 352.910 | |
| SRR5643525 | five period of Gastrodia elata | 119.100 | |
| SRR5643528 | five period of Gastrodia elata | 169.210 | |
| SRR5643658 | five period of Gastrodia elata | 102.630 | |
| SRR5643659 | five period of Gastrodia elata | 383.590 | |
| SRR5643660 | five period of Gastrodia elata | 368.590 | |
| SRR5643661 | five period of Gastrodia elata | 421.140 | |
| SRR5643662 | five period of Gastrodia elata | 332.790 | |
| SRR5643663 | five period of Gastrodia elata | 362.740 | |
| SRR5643664 | five period of Gastrodia elata | 349.460 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 247.760 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 267.820 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 282.120 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 211.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 200.250 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 148.490 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 227.660 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 201.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 330.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 292.570 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 364.640 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 364.640 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 391.14 |
| Juven | Juvenile tuber | 363.45 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 136.74 | |
| Mother_Juven | Mother tuber of Juvenile | 207.83 |