Detail information of GWHGAAEX010861/evm.TU.scaffold_33.32
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|307153682|ref|YP_003889066.1| | 4.00E-50 | FAD dependent oxidoreductase [Cyanothece sp. PCC 7822] |
| KOG | KOG2820 | 6.00E-147 | FAD-dependent oxidoreductase |
| nr | gi|514731722|ref|XP_004957251.1| | 5.73E-166 | PREDICTED: probable sarcosine oxidase-like [Setaria italica] |
| Swissprot | tr|Q9SJA7|SOX_ARATH | 2.00E-147 | Probable sarcosine oxidase |
| trEMBL | tr|K3ZTS9|K3ZTS9_SETIT | 2.00E-166 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si030009m} |
| TAIR | AT2G24580 | 6.00E-147 | FAD-dependent oxidoreductase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000044 | 891222 | 892671 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010861
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01266.23 | DAO | 7 | 371 | 1.50E-43 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00306 | PIPOX | Metabolic pathways | map01100 |
| Pyrimidine metabolism | map00240 | ||
| Lysine degradation | map00310 | ||
| Peroxisome | map04146 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.980 |
| SRR2545915 | Juvenile tuber | 3.650 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 56.690 |
| SRR5643514 | five period of Gastrodia elata | 38.620 | |
| SRR5643515 | five period of Gastrodia elata | 26.270 | |
| SRR5643524 | five period of Gastrodia elata | 29.550 | |
| SRR5643525 | five period of Gastrodia elata | 24.210 | |
| SRR5643528 | five period of Gastrodia elata | 11.400 | |
| SRR5643658 | five period of Gastrodia elata | 5.250 | |
| SRR5643659 | five period of Gastrodia elata | 15.950 | |
| SRR5643660 | five period of Gastrodia elata | 19.450 | |
| SRR5643661 | five period of Gastrodia elata | 17.220 | |
| SRR5643662 | five period of Gastrodia elata | 6.960 | |
| SRR5643663 | five period of Gastrodia elata | 7.270 | |
| SRR5643664 | five period of Gastrodia elata | 5.470 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 37.180 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 79.170 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 40.420 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 34.340 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 32.970 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 31.150 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 21.920 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 25.050 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 48.020 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 39.250 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 105.760 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 105.760 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.34 |
| Juven | Juvenile tuber | 51.64 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 23.46 | |
| Mother_Juven | Mother tuber of Juvenile | 15.02 |