Detail information of GWHGAAEX010863/evm.TU.scaffold_33.36
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3463 | 1.00E-67 | Transcription initiation factor IIA, gamma subunit |
| nr | gi|470101964|ref|XP_004287436.1| | 4.23E-70 | PREDICTED: transcription initiation factor IIA subunit 2-like [Fragaria vesca subsp. vesca] |
| Swissprot | tr|Q39236|T2AG_ARATH | 3.00E-68 | Transcription initiation factor IIA subunit 2 |
| trEMBL | tr|I1JH19|I1JH19_SOYBN | 3.00E-70 | Transcription initiation factor IIA subunit 2 {ECO:0000256|PIRNR:PIRNR009415} |
| TAIR | AT4G24440 | 1.00E-67 | transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000044 | 996013 | 1002463 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010863
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02268.15 | TFIIA_gamma_N | 4 | 49 | 3.70E-23 |
| PF02751.13 | TFIIA_gamma_C | 53 | 101 | 1.50E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03123 | TFIIA2, GTF2A2, TOA2 | Basal transcription factors | map03022 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006367 | Biological Process | transcription initiation from RNA polymerase II promoter |
| GO:0005672 | Cellular Component | transcription factor TFIIA complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 97.740 |
| SRR2545915 | Juvenile tuber | 88.180 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 55.130 |
| SRR5643514 | five period of Gastrodia elata | 56.550 | |
| SRR5643515 | five period of Gastrodia elata | 52.970 | |
| SRR5643524 | five period of Gastrodia elata | 44.370 | |
| SRR5643525 | five period of Gastrodia elata | 45.230 | |
| SRR5643528 | five period of Gastrodia elata | 43.850 | |
| SRR5643658 | five period of Gastrodia elata | 46.420 | |
| SRR5643659 | five period of Gastrodia elata | 48.540 | |
| SRR5643660 | five period of Gastrodia elata | 40.630 | |
| SRR5643661 | five period of Gastrodia elata | 48.260 | |
| SRR5643662 | five period of Gastrodia elata | 36.920 | |
| SRR5643663 | five period of Gastrodia elata | 50.330 | |
| SRR5643664 | five period of Gastrodia elata | 39.640 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 62.110 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 29.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 75.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 82.450 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 68.860 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 71.300 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 52.110 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 58.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 61.330 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 54.380 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 85.880 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 85.880 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 62.92 |
| Juven | Juvenile tuber | 76.68 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 105.80 | |
| Mother_Juven | Mother tuber of Juvenile | 85.52 |