Gene detail

Detail information of GWHGAAEX010866/evm.TU.scaffold_33.39

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4299	2.00E-80	PHD Zn-finger protein
nr	gi\|743812207\|ref\|XP_010929360.1\|	3.23E-147	PREDICTED: pathogenesis-related homeodomain protein-like [Elaeis guineensis]
Swissprot	tr\|P48785\|PRH_ARATH	2.00E-89	Pathogenesis-related homeodomain protein
trEMBL	tr\|M0TT42\|M0TT42_MUSAM	1.00E-138	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P23890_001}
TAIR	AT4G29940_1	2.00E-80	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000044	1032757	1066406	-

Transcript Sequence
>GWHTAAEX010866 TTCCTATTCACTTGGTGAAACACAAATTGGTATGACGTCTGAATGCTCGTATATTTTTAATCTAAAATATTGAACCATTGCATAATTGGTGACTGATCGCCTACTGTTATGAGATTCATGAATGCGCTCGTTATTTTAGAATGCGAACTCCTGGAAAGAAGTTATTTGTATACAAGTCCCGAAAGCAATTTGTCAATGAGGAAATTTCTAAAACCATTTCTATGCCGGTGAAGCAGAATGGTTTTAGAGTTGCCAACAAGAGAAGAAGTTATTTGGCACGAGGAATCTCTAATGAAAGAGTTTGCAAGCGGAATAATACAATTAATGGAAAGCCAGTTGAAACTCTACAATGGAAGTTTGACTGCAATTTAGACAAGCGTATTGGTTCCCTTAGAGTAGCAAAAAAAAGAAGCTGTTTTTCTGTGGACAAGAACTCAAAGAAATTGACTGCTAATTCTGGAAAAAAACTGATCAGGAGGAGAAGGCTCAAAGGAAAGAGGAAGAATGCCTTGCAGGATGAAGCCTCTAGGATGCAAAGAAGAGCGAGGTACTTTTTGATCAAGATGAAGATGGAGCAAAATCTCATAGATGCTTATTCTGGCGATGGATGGAAAGGACAGAGTCGAGAAAAAATAAAACCTGTAAAGGAGTTGCAGAGAGCACACAGACAAATATTGAAATGTAAACTTGGTATTCGGGATTCAATTCATCAGTTGGAATTACTTGGCTTCGAAGGAAGAATTGAAGACTCTGTTATGCATCCAGATGGATCTGTATTCTACGAACATATTTTCTGTGCGAAATGCAAGTTACATGAAGCCCTTCCTGATAATGACATAATACTTTGTGATGGGAATTGCAGTTGTGGCTTCCACCAGAAGTGCCTTGAGCCTCCATTAGAGAAAATTCCTCCTGGAGATCAAGGATGGCTTTGCAAGATTTGCAGTTCTAAGATGGAAATCCTAGAAGCCATAAATGCACACTTAGGCACATGCTTTACCGTGAATAGCAAATGGGAGGATATATTTAAGGAAGCAATTGCTAGTCCAGATTCTGAAGAAGTATGCCATAATCTTGTTGATGTTTGGCCATCTGATGATTCAGAGGATGAAGATTATTTCCCAGACAGCAGCAAAGAAGAAATTGAGGAGAATATCTTGGATAATGCATGCAGTTCAGTTGATTCGATTTTATCTTCTGATGCATCATTAAACTTTGTCAGTTGCATGGGCTCTAATGATTCAACTGATGAGATAATAAACTACCGCAGGCAGCGAAGATTTGTCGACTATAAGAAACTTTATGATGAAATGTTTGGGAATGAGCTACATGAAGGTGAAGAGCGAAGTGAAGATGAAGACTGGGGCCCTTATAGGAAGAAAAAAGTAAAGATTGCATTTGATATAGGCAGTACCTCTACATATGCCAAGGACAAGGACAGTCAAAAGGAAATGGTTTTGCGGGATACATATTCATGTAGTAAGAGACCCTTTTTGAGAATCCCACCCGATGCTCTTGAGGCAGAAGCTGCAATTCAGCCCCACAATACTTGTCATGCATCAGAAGTAAATGAAGGGCATAGACGCACATCTGATGAACCTGCTGTCTCATTGGACAGTTATTGTTTGCTTCCTTTAGCATCCATCTTCGGCTTACCCCGGCATAAGAAGAGGGCCCATAGGAGTGGAAATTTGAATTCTGCTGCAGCATCCACAGTAAAGGAACAGAAAGAAGCTGCCACTACAGTGCGTTCCTGTGCAACTCTGATGCAGATGCTTTGGGTCCTGGAAAGTAGGCTTTATCACCTGAAGCAGCGATTGCAGGCTTGCAACGATGATGTTAATAATAAAGAGGCTGTGATCTATGTTCCAGTTGCAGAGGTGAAGGAGAAGATGGCTTCATGATCTGAAATCATGAGTTTATCATGGCTAGAATTTTCTTTTTCTGAACTTAATATATAGAAGAATTCTTCTTTTTCTTTTGGAGCTTATGCATAGCATACTTGATTCTCCCACAGCTGAAAACAACAAAAGAAAATATTAAAAAACGCATGAGTTTATATGTACTGTACAGTTCTCAAAAGTTTTTCTATACTTTGAAACAAATCTAGGACAGTTAAGGATCATTTTTCTGACTCTCGTTCTTCTCGTTACAAAAGTTATGTCTTGTCATCGATCTGTCATTTGCCGGAAAGGTCAGGCTGGCGGTAAGAGTGCCATGCTCATCAAAACCTTCCTAGTTTGATCACATTTGTTGCAGTTTTTGAGACATTATCGGGTTTGTTCATCCCCTCTATAGGATGTCCAGGCAATCCTGAGAGATCTAGTAGAGGAGTTTGTAACATCCTGAGGGAGATTTGGTATCTTCCTAA

Network for GWHGAAEX010866

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00628.28	PHD	218	270	6.90E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.920
SRP064423	SRR2545915	Juvenile tuber	9.450
SRP108465	SRR5643513	five period of Gastrodia elata	4.630
	SRR5643514	five period of Gastrodia elata	6.490
	SRR5643515	five period of Gastrodia elata	5.710
	SRR5643524	five period of Gastrodia elata	6.230
	SRR5643525	five period of Gastrodia elata	6.600
	SRR5643528	five period of Gastrodia elata	5.680
	SRR5643658	five period of Gastrodia elata	6.970
	SRR5643659	five period of Gastrodia elata	4.190
	SRR5643660	five period of Gastrodia elata	3.710
	SRR5643661	five period of Gastrodia elata	4.700
	SRR5643662	five period of Gastrodia elata	4.690
	SRR5643663	five period of Gastrodia elata	4.490
	SRR5643664	five period of Gastrodia elata	4.500
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.180
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.780
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.390
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.910
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.470
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.350
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.380
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.990
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.890
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.780
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.770
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.770
SRP279888	Gastro	Gastrodia elata tuber	4.53
	Juven	Juvenile tuber	5.85
	Mother_Gastro	Mother tuber of Gastrodia elata	2.52
	Mother_Juven	Mother tuber of Juvenile	4.93