Detail information of GWHGAAEX010872/evm.TU.scaffold_33.47


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|219847371|ref|YP_002461804.1|2.00E-94DEAD/DEAH box helicase [Chloroflexus aggregans DSM 9485]
KOGKOG03270Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases
nrgi|743799304|ref|XP_010925445.1|0PREDICTED: eukaryotic initiation factor 4A-8-like [Elaeis guineensis]
Swissprottr|Q6Z2Z4|IF4A3_ORYSJ0Eukaryotic initiation factor 4A-3
trEMBLtr|A0A0A0LGA9|A0A0A0LGA9_CUCSA0Uncharacterized protein {ECO:0000313|EMBL:KGN59802.1}
TAIRAT3G139200eukaryotic translation initiation factor 4A1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004412797611292895-
Transcript Sequence

Network for GWHGAAEX010872

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00270.28DEAD1182795.00E-40
PF00271.30Helicase_C3194271.90E-28
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03257EIF4A RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding
GO:0005524Molecular FunctionATP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms112.110
SRR2545915Juvenile tuber164.770
SRP108465SRR5643513five period of Gastrodia elata171.870
SRR5643514five period of Gastrodia elata157.230
SRR5643515five period of Gastrodia elata155.390
SRR5643524five period of Gastrodia elata142.360
SRR5643525five period of Gastrodia elata165.430
SRR5643528five period of Gastrodia elata156.060
SRR5643658five period of Gastrodia elata160.140
SRR5643659five period of Gastrodia elata210.340
SRR5643660five period of Gastrodia elata228.010
SRR5643661five period of Gastrodia elata232.680
SRR5643662five period of Gastrodia elata246.390
SRR5643663five period of Gastrodia elata207.600
SRR5643664five period of Gastrodia elata257.270
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1170.420
SRR6049655Rhizomagastrodiae_C368-T10_good_1209.100
SRR6049656Rhizomagastrodiae_C368-T07_good_1182.570
SRR6049657Rhizomagastrodiae_C368-T07_good_1146.840
SRR6049658Rhizomagastrodiae_C368-T04_good_1167.480
SRR6049659Rhizomagastrodiae_C368-T04_good_1148.400
SRR6049660Rhizomagastrodiae_C368-T01_good_1162.360
SRR6049661Rhizomagastrodiae_C368-T04_good_1155.050
SRR6049662Rhizomagastrodiae_C368-T01_good_1185.420
SRR6049663Rhizomagastrodiae_C368-T01_good_1174.600
SRR6049664Rhizomagastrodiae_C368-T10_good_1169.690
SRR6049665Rhizomagastrodiae_C368-T10_good_1169.690
SRP279888GastroGastrodia elata tuber 244.33
JuvenJuvenile tuber181.55
Mother_GastroMother tuber of Gastrodia elata 144.40
Mother_JuvenMother tuber of Juvenile 144.28