Gene detail

Detail information of GWHGAAEX010873/evm.TU.scaffold_33.48

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0213	Splicing factor 3b, subunit 1
nr	gi\|695062994\|ref\|XP_009419988.1\|	PREDICTED: splicing factor 3B subunit 1 [Musa acuminata subsp. malaccensis]
trEMBL	tr\|A0A0A0KVS0\|A0A0A0KVS0_CUCSA	Uncharacterized protein {ECO:0000313\|EMBL:KGN53720.1}
TAIR	AT5G64270	splicing factor, putative

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000044	1308499	1313056	-

Transcript Sequence
>GWHTAAEX010873 CTCTGTAATTTCCGCAGCCTTGAGCGGTCATTGGAAGAATAGATAGACGGCCGAGATTAACCAGCCATTCATCGTAAGCACAAAACGCAGGATATCGCACATCTGCATGGCAAGAACTACGACGCCTCTCTCTCTTTTTGCCCCAGCCAGTGCCGGTAAGCCCTAGAGCTCTCCAGGCAAGTTCTCGACTCTTGCAAAACTCCGAATTTCTACCAATCTTCATGATTTCTATGGTGTTCTGATCCGCGTCCTTTCCAGATTCTCAACTCTAGGTTAGGTTTTGCAGAAAAAGATGGAAGTCGATAGGGATAACATAGATAACGAGATCAGGAAGGCGCAGGAGGAGCGACGGAACATGGAGAACTTGGCTCCTCTATCGTCCGTCACTTTCGACTCCGATCTATACGAGGGCAACCGCTTCGAGGGTTACATGAAATCCATTCCCGTCAATGAGGACGAGGAGGAAGGAGACGGGGATGCTTCCCTTCCCGGCCGCCGCCGTATGCCCTCCTACACGGCTCCGAATTCGCTGATGGATATTCCTCGTTCCGACGGCGATGACGACTCCGGCTTCAAGAAGCCCTCCCGCATCATCGATCGTGAGGACGAGTATCGCCGTCGGCGACTCGATCGGATCATCTCCCCCGCACGTAACGATCCCTTCGCTTCGGGCGAAGCGACTCCTGACCCATCTGTTCGAACTTATGCCGATGTTATGCGTGAACAAGCCCTTCAGCGGCAGAAGGAAGAGTTGCTAAAAGCTGCAGCGAAAAAACATGAAGAGGAGAAGAACGCCAAAGCTGCTGCAGCTGAAGCTCCTATGGCGGCTGCGGCGGCGGCAGCGGCTCAGAAAAGGAGGAACCGGTGGGATCAGGCGCAGGATGTTGACGGTGCATCTACTGCAAAGAAGGTGAAATCAAGCTCTGATTGGGATGCACCCGATTCGACTCCTGGGATTGGGAGGTGGGATGCTACTCCTACTCCTGGAAGAGTTGGGGATGCAACCCCTTCGATTTCTCGGAGGAATCGTTGGGATGAGACTCCGACTCCCGGACGGCTTGCTGATTCTGATGCTACACCAGCATCTGCCACTCCGGGCGCAACTCCAGCCGGGATGACATGGGATGCTACCCCAAAGCTCGGCGGTCTGGCTACTCCTACTCCCAAAAGACAGCGATCAAGATGGGATGAAACTCCTGCTACCATGGGAAGTGCTACTCCGCTGTCCGGAGCGACAACTCCGGCCGCAGCCTTTACTCCTGGTGTCACCCCCATTGGTGGAGTTGATTTGGCAACCCCTACTCCCGGGTCCATCAATCTACGGGGACCTATGACTCCGGAGCAGTATAATTTACTGAGGTGGGAGAGGGACATTGAAGAGAGGAACAGGCCTTTGACTGATGAAGAGCTTGATGCTATGTTTCCTCAGGAGGGTTACAAGATCCTTGAACCGCCAGCTTCTTATGTTCCCATTAGGACTCCTGCAAGGAAGCTTCTTGCTACTCCAACTCCTATTGGCACACCGCTTTATGCAATCCCTGAAGAGAATCGGGGGCAGCAGTTTGATGTTCCGAAGGAGGCACCTGGAGGCTTACCATTCATGAAACCCGAGGATTATCAGTACTTTGGGGCTCTTTTGAATGAGGAAGAGGAGGAGGAGCTCTCTCCAGAGGAGCAGAAGGAGCGGAAAATCATGAAGCTCTTGTTAAAGGTGAAGAATGGTACTCCACCACAGAGGAAAACAGCATTGAGACAACTTACTGATAAGGCTAGGGAATTTGGGGCGGGCCCTCTGTTCAACAAAATTCTTCCTTTGCTCATGCAACCTACTCTCGAAGACCAGGAGAGGCATCTCTTGGTGAAGGTTATTGACAGGGTGCTGTACAAGTTGGATGAGTTGGTTCGTCCCTTTGTGCACAAGATTCTTGTGGTTATCGAGCCTCTACTGATTGATGAGGACTATTATGCTCGTGTTGAAGGAAGAGAAATAATTTCTAATCTAAGCAAAGCAGCTGGTTTGGCCACAATGATTGCTGCAATGAGGCCTGATATTGATAACATTGATGAATATGTGAGGAATACCACTGCTAGGGCTTTCAGTGTGGTGGCTTCTGCTTTGGGGATCCCTGCTCTCTTACCTTTCTTGAAGGCTGTCTGCCAAAGTAAAAAGTCCTGGCAAGCACGACACACTGGTATAAAGATTGTGCAACAGATTGCAATTCTCATGGGATGTGCAGTTCTTCCACACTTAAGGTCTTTGGTTGAAATTATTGAACATGGGCTGAGTGATGAGAATCAAAAGGTCAGAACAATTACTGCCCTTTCTCTTGCAGCGTTGGCAGAAGCTGCTGCTCCTTATGGTATAGAAAGTTTTGATTCAGTTCTAAAGCCACTTTGGAAGGGTATTCGATCACACCGTGGAAAGGTTCTTGCTGCTTTTTTAAAGGCAATTGGCTTCATTATTCCCCTTATGGATGCACTATATGCAAGTTATTACACAAAGGAAGTGATGGTCATTCTTATTCGCGAGTTCCAATCTCCTGATGAAGAAATGAAGAAGATTGTGCTCAAAGTTGTTAAGCAGTGTGTAAGCACTGAAGGTGTTGAAGCTGATTACATACGAAATGATATTCTTCCAGAGTTCTTTAAAAATTTTTGGGTGAGGAGAATGGCCCTTGATCGAAGGAACTATAAGCAACTTGTGGACACTACTGTTGAAATTGCAAATAAGGTCGGAGTGGCAGATATTGTTGGGAGGATTGTAGAAGATCTTAAAGATGAGAGTGAGCCCTACCGGAGAATGGTAATGGAAACTATTGAGAAAGTGGTATCCAATTTGGGGGCTTCTGATATTGATGCCCGCTTGGAAGAGCTGCTCATTGATGGGATTCTTTATGCATTCCAAGAACAAACCAGTGATGATGCAAATGTCATGCTCAATGGATTTGGTGCAGTGGTGAATGCTCTTGGGCAGAGAGTAAAACCTTACTTACCCCAGATCTGTGGAACAATCAAATGGCGATTGAACAACAAAAGTGCAAAAGTACGGCAGCAAGCTGCTGATCTTATATCACGAATTGCAGTTGTCATGAAGCAGTGTCATGAAGAGCAGCTGATGGGTCATTTGGGTGTTGTTCTATATGAGTATCTTGGAGAAGAGTATCCTGAGGTTTTAGGTTCTATTCTGGGAGCATTAAAGGCAATAGTTAATGTTATTGGTATGACCAAGATGACTCCGCCAATTAAAGACTTGCTTCCTCGGCTGACCCCTATCTTGAAGAACAGACATGAAAAGGTTCAGGAAAATTGTATTGATCTTGTTGGTAGGATTGCTGATCGTGGTGCTGAGTTCGTTCCTGCTAGAGAGTGGATGAGGATTTGTTTTGAGCTCCTTGATATGCTAAAAGCTCACAAAAAAGGCATTAGAAGAGCTACCGTTAATACCTTTGGGTACATTGCAAAAGCAATTGGACCGCAGGATGTTTTGGCAACTTTATTAAATAATTTAAAAGTGCAGGAGCGTCAAAATCGTGTTTGCACAACAGTTGCGATTGCAATAGTTGCCGAAACATGCTCCCCGTTCACTGTACTACCTGCTCTTATGAATGAATACCGTGTGCCAGAATTGAATGTGCAGAATGGAGTTTTAAAATCTCTTTCTTTTCTTTTTGAGTACATTGGAGAGATGGGCAAGGATTACATTTATGCTGTAACACCATTACTGGAGGATGCTTTGATGGACAGGGATCTTGTTCATAGGCAGACTGCTGCCTCCGCTGTGAAGCACATGGCATTAGGTGTTGCTGGGTTGGGCTGTGAGGATGCTTTGGTCCATCTGTTGAACTATGTGTGGCCAAACATATTTGAAACTTCTCCCCATGTTATAAATGCAGTAATGGAGGCTATTGAAGGAATGAGAGTTGCCTTAGGAGCTGCTGTCATCCTAAACTACTGCCTCCAGGGCCTGTTTCATCCAGCAAGGAAGGTTCGTGAGGTTTACTGGAAGATTTATAACTCGTTATATATTGGAGCTCAAGATGCACTTGTTTCTGCCTACCCAGTGCTCGAGGATGAGGAGAACAACATATACAGCAGGCCTGAATTGGTGATGTTTGTCTAACATGATTATGAATGCTTCAAGAGGGTGCTTGTGCTTATGGTGTGATTTTATATCTATTGTTTGCTACTATGAACTAGGTAATACTAAAAGATAGGCATGCTTATTTTGTTATTTTGTTTCTGCATTCTTCATTTTTAAAACTTGTTAGAACAAATCATTGAGGTTAGAAACTTGATCCATTTTCTTGTTCTGTGTTATTTGTTTTATATATATATATATATATATATATTCTGTTTTATAGATAGAATACTGGGAGAAATATTAAATATTGTTTTTTGTTATTTGAAATCGGTACCCTACTTATCTGTTTAGTTGTGCTCGTTGCAGCTTGTCCTGTATATGATATTTAATGTCTGTTATGGCTTTATGATGTTTTATTTTCTGCTCTTTAGGATGCTTATTCAGTGAAACTTTTGATTATGTGATGAAAATGAACTC

Network for GWHGAAEX010873

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08920.9	SF3b1	290	420	2.10E-43

Protein Sequence

>GWHPAAEX010873
MEVDRDNIDNEIRKAQEERRNMENLAPLSSVTFDSDLYEGNRFEGYMKSIPVNEDEEEGDGDASLPGRRRMPSYTAPNSLMDIPRSDGDDDSGFKKPSRIIDREDEYRRRRLDRIISPARNDPFASGEATPDPSVRTYADVMREQALQRQKEELLKAAAKKHEEEKNAKAAAAEAPMAAAAAAAAQKRRNRWDQAQDVDGASTAKKVKSSSDWDAPDSTPGIGRWDATPTPGRVGDATPSISRRNRWDETPTPGRLADSDATPASATPGATPAGMTWDATPKLGGLATPTPKRQRSRWDETPATMGSATPLSGATTPAAAFTPGVTPIGGVDLATPTPGSINLRGPMTPEQYNLLRWERDIEERNRPLTDEELDAMFPQEGYKILEPPASYVPIRTPARKLLATPTPIGTPLYAIPEENRGQQFDVPKEAPGGLPFMKPEDYQYFGALLNEEEEEELSPEEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNKILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPFVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILMGCAVLPHLRSLVEIIEHGLSDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYASYYTKEVMVILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRNDILPEFFKNFWVRRMALDRRNYKQLVDTTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVSNLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNALGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLDMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVILNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVSAYPVLEDEENNIYSRPELVMFV

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12828	SF3B1, SAP155	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	95.970
SRP064423	SRR2545915	Juvenile tuber	64.020
SRP108465	SRR5643513	five period of Gastrodia elata	58.930
	SRR5643514	five period of Gastrodia elata	52.220
	SRR5643515	five period of Gastrodia elata	53.540
	SRR5643524	five period of Gastrodia elata	52.350
	SRR5643525	five period of Gastrodia elata	74.120
	SRR5643528	five period of Gastrodia elata	65.000
	SRR5643658	five period of Gastrodia elata	84.930
	SRR5643659	five period of Gastrodia elata	72.650
	SRR5643660	five period of Gastrodia elata	86.140
	SRR5643661	five period of Gastrodia elata	75.290
	SRR5643662	five period of Gastrodia elata	74.720
	SRR5643663	five period of Gastrodia elata	63.540
	SRR5643664	five period of Gastrodia elata	78.730
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	78.870
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	61.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	67.720
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	104.280
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	84.210
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	103.550
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	91.380
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	87.620
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	61.170
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	66.480
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	60.190
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	60.190
SRP279888	Gastro	Gastrodia elata tuber	66.71
	Juven	Juvenile tuber	126.45
	Mother_Gastro	Mother tuber of Gastrodia elata	54.33
	Mother_Juven	Mother tuber of Juvenile	97.13