Gene detail

Detail information of GWHGAAEX010875/evm.TU.scaffold_33.51

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4161	6.00E-86	Methyl-CpG binding transcription regulators
nr	gi\|743804417\|ref\|XP_010927187.1\|	1.98E-114	PREDICTED: methyl-CpG-binding domain-containing protein 2-like [Elaeis guineensis]
Swissprot	tr\|Q8LA53\|MBD2_ARATH	2.00E-86	Methyl-CpG-binding domain-containing protein 2
trEMBL	tr\|D7T0S0\|D7T0S0_VITVI	3.00E-98	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI24099.3}
TAIR	AT5G35330	6.00E-86	methyl-CPG-binding domain protein 02

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000044	1407751	1434519	+

Transcript Sequence
>GWHTAAEX010875 CACGAATAGAGTACCCTAACCTGGGCACTCACAAGTATTGCTGGTGGGTGTTCGAATTGATTTTATGATCTATCGATGGAGGGAGCTGCAGAATCTCAGATCTTTCAGTTCTTCGTCTATTTCGATTAGCCATTAGCCCATTATTATTACAATCGACTTTAATCAGTGAGCTAGAGCGTCAATCCGGTCACGGGAGAGGACACGAGGCGGAAGACGGAGTCCGACTTGGGTGCAGTAGCTTCTCAGGGTGTCAAGGCTTTTCTCATCTTCTCTTCTCAACGAAGTTCCACCGCCGCTTAGGTTAACTTATTGCTGTCAATGCTGATGCGATCAGACACGGGAGATGAGTCACCCATTGTTAAAAGTGAATTTCGTACCTCATCCCGGCCTCTGATGAGGAGCCACAGGAAGTCACAGGACCATGCAAAGGTTGATGTTGAGGATAATACACACTTTAGTGGAACTTCCCCAAACCAATTGATCGTTTTTAATCCTGGTTCTAGCTCTGGTGATGATTTGCATCCTGCATCCAATGACATAATTAATACGCCTGCATCATTGAACTCTATAACACCAACTTCTTCTAGTCGCCCTCTTCCATCTGTTGGGGCATTCACCGTTCAGTGTGCATCATGCTTTAAGTGGAGGCTTATTCCAACCAAAGAGAAATATGAACAAATACGTGAAAGCATTTTACAAGTACCTTTTGTATGTGATAAAGCTCGTGAATGGAGACCTGATATATCCTGTGATGATCCACCAGACATTTTGCAAGATGGAAGTAGGCTTTGGGCCATTGATAAACCTAACATTGCTCAACCACCTCCTGGCTGGGACAGACAACTTAGAATCAGAGGTGAAGGAGGGACAAGATTTGCAGATGTGTATTATGTTGCACCATCCGGAAAGAAACTGCGCTCTATGGTCGAGATTCAAAGATACCTGGAAGAACGTCCTGAGTTTCATGGGGTGAACATGTCACAATTTTCATTTCAGGTACCAAAACCTCTTCAAGAAAATTATGTGAAAAAACGCCCTTCACGGCCGGTAAATGCTAGTGATGGCGCTGGTTTGGGGTTACCAGGACTTCCTGAACCTGTTGAAGCATTCCCCTTATCTTGGGCTGCCCCACCAATTCAGCAAGAAGGTGAGGCGGAAGAACCCGAAACGGCATCTGATCTCACACCAAATTCTGACTCCTCTCAGCAATTGAAAAAGAGGGCTGCCAAAGAGCAGGTTCGGAGGCCGTCGTCAAAGAAGATGTGCTCTAACAGCAGCTCAGAGCACTCTCCATTGAAAGCAAAGCTTGAGAGTGCCCAGCAAGACGAACAAGGGGCCCTATGAACTGTTCCATTCCCGCCGCGTTTGCCCGTGACTAAAATGCTAATTTCATGATCCTTTTTTGTTAGTTTGTTGGAAAGATGAGTTCCCCCTTTTTTTTCTTTTAATTGGCATTGAGGTTGTGTTCTTTTGTCCTGTTTTGGGAGATTCTGGGGGTACTGTATGTTTATTTCTTGAGCGCTATTAATGCAGATTCAGAATATGAACAGATATGTAAGATTGCATGCTTTATTTATTAAATAGGGAATTATCCCTCTATGGGTAAGTATCAATGGAAATGTATTTTAGTATTGCATTTTGTTTGCTTTTGTGGCGTTCATATATTTATGTTGTTTTTGTTCAAGAAACGAATGATATGAAAGTGCTATTTTTTTGGGAA

Network for GWHGAAEX010875

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07496.14	zf-CW	99	149	1.20E-11
PF01429.18	MBD	169	228	1.60E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	Molecular Function	zinc ion binding
GO:0003677	Molecular Function	DNA binding
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	78.130
SRP064423	SRR2545915	Juvenile tuber	65.010
SRP108465	SRR5643513	five period of Gastrodia elata	56.620
	SRR5643514	five period of Gastrodia elata	49.430
	SRR5643515	five period of Gastrodia elata	51.440
	SRR5643524	five period of Gastrodia elata	52.770
	SRR5643525	five period of Gastrodia elata	64.980
	SRR5643528	five period of Gastrodia elata	53.350
	SRR5643658	five period of Gastrodia elata	54.970
	SRR5643659	five period of Gastrodia elata	55.250
	SRR5643660	five period of Gastrodia elata	57.210
	SRR5643661	five period of Gastrodia elata	49.290
	SRR5643662	five period of Gastrodia elata	53.840
	SRR5643663	five period of Gastrodia elata	52.370
	SRR5643664	five period of Gastrodia elata	52.570
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	52.740
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	60.900
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	50.350
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	61.180
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	59.940
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	69.650
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	51.080
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	57.530
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	55.650
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	54.090
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	51.340
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	51.340
SRP279888	Gastro	Gastrodia elata tuber	62.89
	Juven	Juvenile tuber	119.08
	Mother_Gastro	Mother tuber of Gastrodia elata	58.47
	Mother_Juven	Mother tuber of Juvenile	80.13