Detail information of GWHGAAEX010876/evm.TU.scaffold_33.52


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|720099857|ref|XP_010248062.1|5.92E-35PREDICTED: uncharacterized protein LOC104590991 [Nelumbo nucifera]
trEMBLtr|M0TKU9|M0TKU9_MUSAM3.00E-33Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P26130_001}
TAIRAT3G263608.00E-28Ribosomal protein S21 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004414349501445612+
Transcript Sequence

Network for GWHGAAEX010876

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01165.19Ribosomal_S2138916.20E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02970RP-S21, MRPS21, rpsU Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms22.700
SRR2545915Juvenile tuber37.510
SRP108465SRR5643513five period of Gastrodia elata46.780
SRR5643514five period of Gastrodia elata60.970
SRR5643515five period of Gastrodia elata48.720
SRR5643524five period of Gastrodia elata52.020
SRR5643525five period of Gastrodia elata33.560
SRR5643528five period of Gastrodia elata31.590
SRR5643658five period of Gastrodia elata29.340
SRR5643659five period of Gastrodia elata52.470
SRR5643660five period of Gastrodia elata46.860
SRR5643661five period of Gastrodia elata48.310
SRR5643662five period of Gastrodia elata44.580
SRR5643663five period of Gastrodia elata37.960
SRR5643664five period of Gastrodia elata34.320
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_149.200
SRR6049655Rhizomagastrodiae_C368-T10_good_118.580
SRR6049656Rhizomagastrodiae_C368-T07_good_158.410
SRR6049657Rhizomagastrodiae_C368-T07_good_135.780
SRR6049658Rhizomagastrodiae_C368-T04_good_139.590
SRR6049659Rhizomagastrodiae_C368-T04_good_128.090
SRR6049660Rhizomagastrodiae_C368-T01_good_148.250
SRR6049661Rhizomagastrodiae_C368-T04_good_142.040
SRR6049662Rhizomagastrodiae_C368-T01_good_167.670
SRR6049663Rhizomagastrodiae_C368-T01_good_157.630
SRR6049664Rhizomagastrodiae_C368-T10_good_171.240
SRR6049665Rhizomagastrodiae_C368-T10_good_171.240
SRP279888GastroGastrodia elata tuber 49.91
JuvenJuvenile tuber42.13
Mother_GastroMother tuber of Gastrodia elata 26.82
Mother_JuvenMother tuber of Juvenile 19.62