Gene detail

Detail information of GWHGAAEX010878/evm.TU.scaffold_33.54

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|428779145\|ref\|YP_007170931.1\|	acetyl-CoA carboxylase, biotin carboxylase subunit [Dactylococcopsis salina PCC 8305]
KOG	KOG0238	3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit
nr	gi\|695054776\|ref\|XP_009415528.1\|	PREDICTED: biotin carboxylase 2, chloroplastic-like isoform X1 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|B9HBA8\|ACCC1_POPTR	Biotin carboxylase 1, chloroplastic (Precursor)
trEMBL	tr\|M0TTB7\|M0TTB7_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P24640_001}
TAIR	AT5G35360	acetyl Co-enzyme a carboxylase biotin carboxylase subunit

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000044	1504680	1545242	+

Transcript Sequence
>GWHTAAEX010878 GCTTAATTTTTCTGTGAAAGGCGGAGTTCCCAAATTTCCCTCGATCTCATCGATCCCCGTATCATAAAAATCGGACGTGCGTTGCGTACGCACGCACATGACCGCTAGACTCTCGCCACTCGATCGCGTCTTCTATTTTCCCACCTCAGCCGACCGAGCCTCGTGAAGCCGGCCGTTGCCTTCTTCACGACCCCTCGTCGCATCTGCCAACCTTCCCGATCGAACACGCCGACGCGCACCTACCTCTGCGAAAGGAGATGCCTCTGGAACTCTGCGGCAGAGGCGCAGGAAGCGTTCCACCTATGGTACTGCTTCTCAAATCAACTCAAGGAATTAGGAGCTCACAATGCAACTTTATGGTTGGAAATTCTCCAACTTTTCAAAAATTATTCTTACCCGGAAAGAGGGTTGCCTATATTAATCCCAGGTTTAAAAATTCTGGCGGAGTTCTCTGCAAAATTTACCAGGATGAGAAAATTCTTGTGGCAAACAGAGGCGAGATTGCAGTTCGTGTCATTAGAACTGCTCACGAGATGGGAATACCATGTGTTGCTGTACACTCTACAATTGATAAGGACGCCCTTCATGTGCGGCTGGCAGACGAGGTTATATGCATTGGTGAAGCTCCAAGCAGTCAATCGTACTTATCCATTTCAAATGTTCTTTCTGCTGCCGTTAGCCATCAATGCACCATGCTGCATCCAGGTTATGGCTTTTTGGCTGAAAATGCTGGCTTTGTTGATATATGCAAAGAGCATGGAATCAACTTTATTGGTCCTAATCCTGACAGCATTCGAGTTATGGGTGATAAATCTACTGCTAGAGAAACAATGAAGAAAGCGGGTGTCCCAACTGTTCCTGGAAGTGAAGGATTGCTGCAGTCTACCGAAGAAGCTGTCAAGCTTGCCCACGAAATAGGATTTCCTGTCATGATCAAGGCGACTGCTGGCGGTGGAGGACGAGGAATGCGATTAGCTCTTCATCCTGCTGAATTTGTGAAGTTGCTGCAGCAAGCAAAAAGTGAAGCAGCAGCTGCTTTTGGAAATGATGGTGTTTATCTTGAGAAGTACATTCAAAATCCAAGACACATTGAGTTTCAGGTTCTTGCTGATAAGTATGGAAATGTTGTTCATTTTGGGGAGCGTGATTGTAGTATTCAGAGAAGAAATCAGAAACTATTAGAAGAAGCCCCTTCACCTGCTTTGACTCCAGAACTTCGGCAAGCTATGGGAGATGCAGCAGTGGCAGCAGCTGCATCTATTGGCTATATTGGTGTAGGGACCGTGGAATTTCTTTTGGATGAGAGAGGTTCCTTCTACTTCATGGAAATGAACACAAGGATTCAGGTTGAGCACCCCGTCACAGAAATGATTTCCTCAACTGATTTGATTGAGGAGCAAATTCGTGTCGCACTTGGAGAGAAGTTGACCTACAAACAGGAAGATATCATTCTCAGAGGACATTCAATTGAATGCCGCATCAATGCAGAGGATCCATTTAAGGGATTTCGTCCCGGGCCAGGTAAAATCACAGCTTACCTTCCATCTGGAGGTCCATTTGTAAGAATGGATAGTCATATTTATCCAGATTATGTGGTGCCACCTAGCTATGACTCTCTACTTGGAAAGCTTATTGTCTGGGCCCCAACCAGGGATAAAGCGATTGAACGGATGAAAAGAGCTCTAAATGACACTGTCATTACTGGTGTCCCAACAACAATTGAGTATCACAAGCTTATCCTCGATGTTGAGGACTTTAGAAATGGAAAGGTAGACACTGCATTCATACCAAAGCATGAAAGCGAGTTGGCTGAGCCACACAAGATGGTGCTAGCTAAGACAGTGAAGGAGATTGCAGATGTCAATTAATCGGATCTCTTCCGAAGTTGCGTTACATTCATTCATTTCGGTAGAGGCTTCATTTTCATAGCACGTAGAAATTTGATACGCTTTATAAAGTGCGATACTTTATAGTTAATTTTTATTCATAACATTTTTGTTACGAGAGTCTGTATTTCTGCTAGGCTTTATGGCATTTATGTATGTTGTCTTAAATCTAATTCGCATGATAGTTTAACATAATTTCAATCTTTTTTCCTATTTTCTTAAGTGAAAGCTATTTAACTCTCAAATAGCTCTTCAAAAAGGTTAGATGACTAATATTTTGCATATAAAATATGTATTTTTTAGTAGTGCATATAAAAAGTGGAGTTAATGTTGTTTTTTTGCGAG

Network for GWHGAAEX010878

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00289.21	Biotin_carb_N	72	179	1.60E-40
PF02786.16	CPSase_L_D2	184	391	9.00E-82
PF02785.18	Biotin_carb_C	405	510	1.70E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01961	accC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Biosynthesis of antibiotics	map01130
		Carbon metabolism	map01200
		Fatty acid metabolism	map01212
		Pyruvate metabolism	map00620
		Propanoate metabolism	map00640
		Carbon fixation pathways in prokaryotes	map00720
		Fatty acid biosynthesis	map00061

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding
GO:0046872	Molecular Function	metal ion binding
GO:0016874	Molecular Function	ligase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	26.790
SRP064423	SRR2545915	Juvenile tuber	25.310
SRP108465	SRR5643513	five period of Gastrodia elata	39.390
	SRR5643514	five period of Gastrodia elata	47.500
	SRR5643515	five period of Gastrodia elata	37.380
	SRR5643524	five period of Gastrodia elata	44.150
	SRR5643525	five period of Gastrodia elata	29.360
	SRR5643528	five period of Gastrodia elata	45.300
	SRR5643658	five period of Gastrodia elata	30.610
	SRR5643659	five period of Gastrodia elata	23.840
	SRR5643660	five period of Gastrodia elata	24.280
	SRR5643661	five period of Gastrodia elata	23.230
	SRR5643662	five period of Gastrodia elata	22.020
	SRR5643663	five period of Gastrodia elata	21.370
	SRR5643664	five period of Gastrodia elata	17.980
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	43.610
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	47.310
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	45.630
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	39.880
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	41.510
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	40.010
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	40.390
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	38.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	59.970
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	51.780
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	63.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	63.880
SRP279888	Gastro	Gastrodia elata tuber	25.06
	Juven	Juvenile tuber	41.72
	Mother_Gastro	Mother tuber of Gastrodia elata	48.43
	Mother_Juven	Mother tuber of Juvenile	51.00