Gene detail

Detail information of GWHGAAEX010881/evm.TU.scaffold_33.59

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG3037	1.00E-123	Cell membrane glycoprotein
nr	gi\|700259149\|gb\|AIU51179.1\|	0	regulatory particle non-ATPase 13, partial [Iris japonica]
Swissprot	tr\|O48726\|RPN13_ARATH	1.00E-130	26S proteasome regulatory subunit RPN13
trEMBL	tr\|A0A097PT40\|A0A097PT40_9ASPA	0	Regulatory particle non-ATPase 13 {ECO:0000313\|EMBL:AIU51179.1} (Fragment)
TAIR	AT2G26590	1.00E-123	regulatory particle non-ATPase 13

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000044	1613409	1627852	+

Transcript Sequence
>GWHTAAEX010881 ATAATAATATCGAGCCTCAGCTAATTTGTCTCTGTAATATCTCCCGAACCCTAACTGAATTCCGGGTTGAGCTGCCGTCGATCGTGCACCCTCTGCCCCTCCTCCTCGCAAGATTCATAGTCCATCTTTTGTTTCTCTCTGGCATACAGCAGACTTCGGCGTTCGACCCTCCTTTAAAGCTCCACCCGTCGTTGTCTTTGCCTCTCTGGCAGACGGTTGCTTCGAAGTTGAATCAGGCATTGAATTCAGTTTCTGCGTCGACCAATAAGTTGATATATGGGTTCCCCGGCTGTGGAGGTTCTTACTCCGTTGCAGGAAATTATGTTGGAGTTTCGTGCTGGTAAGATGATTCTCCATGGAACGCAAGTTATTCCTGATACGCGTAAAGGGCTTGTAAGAATAGGAAGGGGTGAAGAAGGATTAGTACATATTCAGTGGATTGATCGTATACAGAACATTGTTGAAGATGATCAGATTATCTTCCCAGATGAAGCTGTTTTTGAGAAGGTGGCACAATCCTCTGAAAGAGTTTTCATATTGAAGTTTAGCTCTGATAATAGGAAGTTCTTCTTTTGGATGCAGGAGCCAAAATCTGATGGAGACCTACAATTATGCAACTCAGTCAATTCATGTATCAATCGTCCATTAGATATCATTGGTGAAGATGAGGCTGAGGCTTCAATTCCTATGCATATGTCTGAAATTTCTGAAGATACAGCTGATGATGATATCTCATCAAGGGCTGGAAACTTGGTTGACCACAACATGTCTGGGGAATTAGCTGGTGAAGTGACCTCATCAGCTGGACCCGTAAAATTGGCAGATTTGCAAAGAATATTAAGAAATATTCAAACACCTGCGGAAGCTATTCAAGATCCAGATGCAGGTTTGGGTTTGGGAGATATTCTGAAGCCTGATCTGCTGAAGCCGTTGGTTGAATCATTATCATTAGAACAAAGATTAGCTTCATACTTACCCGAGGGTTCTTGGACTCCTCAGGAAATTATGGACTTACTGCAGAGTCCACCTTTCCGTCAGCAAGTTGATTCATTCAGTCATGTTCTTCGTACGGGACAGATAGATTTGTCGCAATTCGGGATCAATCCGAGTAAATATAACTTCACTGTGATCTCTTTCCTGGAAGCCTTGGAGGACGCGGTTGAAGGATCTCCGGAATCCGGCAGAGAGCCCGATTCGAGTCTGGATAGCAGCAACAATGCCATGGATGAAAGCTGATGAGAACGGGACCAATCTGGATGGCATTTGGAAAATAGGGCGTTTGATCTGAGAGTGCGAAAGTGATTATTGTTCAGCGGCTGGTGGTATGATGATCTTCTGAGCTGTGCAGCTGCTTATCCATTGGTGGTGATTTTGCCACACAAGATAAAATTCCGTGAATTAATTGAGTCTGTTGTGCTCGCAATTTACCGTAATTGAGCTAAGATTTAAATGTATCTTGAACTTTTCATAGTATTTGAATGTATGATTATATTGAAACATATTTAGAAGAAATTTTGGGGTGCAAGTGTTTCAAGTTGTAGGATTATAATAGGGCCATCTTTTCTCTTTATTTTTTGCTGTTGATTGCAAGTTTTGTTAGAACTGTGGTTGGCACTTAATTGTTGGTATGACTCGTGCGCACAAGATTTAAAATATGGAGGCTATTTGAGCATTCTTTCTCAC

Network for GWHGAAEX010881

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04683.12	Proteasom_Rpn13	22	103	4.80E-23
PF16550.4	RPN13_C	185	291	2.70E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06691	RPN13	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	67.530
SRP064423	SRR2545915	Juvenile tuber	73.710
SRP108465	SRR5643513	five period of Gastrodia elata	47.650
	SRR5643514	five period of Gastrodia elata	42.130
	SRR5643515	five period of Gastrodia elata	41.120
	SRR5643524	five period of Gastrodia elata	37.990
	SRR5643525	five period of Gastrodia elata	36.680
	SRR5643528	five period of Gastrodia elata	29.450
	SRR5643658	five period of Gastrodia elata	35.360
	SRR5643659	five period of Gastrodia elata	56.760
	SRR5643660	five period of Gastrodia elata	64.420
	SRR5643661	five period of Gastrodia elata	56.100
	SRR5643662	five period of Gastrodia elata	57.260
	SRR5643663	five period of Gastrodia elata	64.550
	SRR5643664	five period of Gastrodia elata	63.370
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	50.810
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	51.350
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	48.420
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	56.770
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	52.180
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	56.890
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	53.640
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	54.460
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	47.900
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	51.680
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	46.260
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	46.260
SRP279888	Gastro	Gastrodia elata tuber	86.82
	Juven	Juvenile tuber	70.38
	Mother_Gastro	Mother tuber of Gastrodia elata	63.06
	Mother_Juven	Mother tuber of Juvenile	65.45