Detail information of GWHGAAEX010884/evm.TU.scaffold_33.62
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|327405187|ref|YP_004346025.1| | 0 | squalene/oxidosqualene cyclase [Fluviicola taffensis DSM 16823] |
| KOG | KOG0497 | 0 | Oxidosqualene-lanosterol cyclase and related proteins |
| nr | gi|743870520|ref|XP_010906067.1| | 0 | PREDICTED: cycloartenol synthase-like [Elaeis guineensis] |
| Swissprot | tr|Q9SXV6|CAS1_GLYGL | 0 | Cycloartenol synthase |
| trEMBL | tr|C7U323|C7U323_9LILI | 0 | Cycloartenol synthase {ECO:0000313|EMBL:CBD47302.1} |
| TAIR | AT2G07050 | 0 | cycloartenol synthase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000044 | 1679848 | 1703336 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010884
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13249.5 | SQHop_cyclase_N | 99 | 377 | 5.70E-38 |
| PF13243.5 | SQHop_cyclase_C | 413 | 750 | 4.20E-50 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01853 | CAS1 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Steroid biosynthesis | map00100 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016104 | Biological Process | triterpenoid biosynthetic process |
| GO:0042300 | Molecular Function | beta-amyrin synthase activity |
| GO:0016866 | Molecular Function | intramolecular transferase activity |
| GO:0000250 | Molecular Function | lanosterol synthase activity |
| GO:0005811 | Cellular Component | lipid particle |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.650 |
| SRR2545915 | Juvenile tuber | 11.400 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.680 |
| SRR5643514 | five period of Gastrodia elata | 17.890 | |
| SRR5643515 | five period of Gastrodia elata | 14.430 | |
| SRR5643524 | five period of Gastrodia elata | 18.610 | |
| SRR5643525 | five period of Gastrodia elata | 9.620 | |
| SRR5643528 | five period of Gastrodia elata | 11.400 | |
| SRR5643658 | five period of Gastrodia elata | 11.740 | |
| SRR5643659 | five period of Gastrodia elata | 17.540 | |
| SRR5643660 | five period of Gastrodia elata | 14.330 | |
| SRR5643661 | five period of Gastrodia elata | 18.870 | |
| SRR5643662 | five period of Gastrodia elata | 18.140 | |
| SRR5643663 | five period of Gastrodia elata | 16.870 | |
| SRR5643664 | five period of Gastrodia elata | 16.650 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.060 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.590 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.100 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.690 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.200 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.520 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.620 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.680 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.070 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.290 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.290 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.78 |
| Juven | Juvenile tuber | 18.21 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.86 | |
| Mother_Juven | Mother tuber of Juvenile | 15.40 |