Detail information of GWHGAAEX010885/evm.TU.scaffold_33.63
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|406025139|ref|YP_006705440.1| | 6.00E-114 | aspartate--tRNA ligase [Cardinium endosymbiont cEper1 of Encarsia pergandiella] |
| KOG | KOG0556 | 0 | Aspartyl-tRNA synthetase |
| nr | gi|672177925|ref|XP_008809075.1| | 0 | PREDICTED: aspartate--tRNA ligase, cytoplasmic-like [Phoenix dactylifera] |
| Swissprot | tr|Q9SW96|SYNC1_ARATH | 2.00E-26 | Asparagine--tRNA ligase, cytoplasmic 1 |
| trEMBL | tr|K4C2U9|K4C2U9_SOLLC | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc05g056250.2.1} |
| TAIR | AT4G31180 | 0 | Class II aminoacyl-tRNA and biotin synthetases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000044 | 1737950 | 1754116 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010885
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00152.19 | tRNA-synt_2 | 185 | 504 | 3.20E-75 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K22503 | DARS | Aminoacyl-tRNA biosynthesis | map00970 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006422 | Biological Process | aspartyl-tRNA aminoacylation |
| GO:0006418 | Biological Process | tRNA aminoacylation for protein translation |
| GO:0004812 | Molecular Function | aminoacyl-tRNA ligase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0004815 | Molecular Function | aspartate-tRNA ligase activity |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 119.670 |
| SRR2545915 | Juvenile tuber | 108.910 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 99.330 |
| SRR5643514 | five period of Gastrodia elata | 104.420 | |
| SRR5643515 | five period of Gastrodia elata | 91.810 | |
| SRR5643524 | five period of Gastrodia elata | 104.030 | |
| SRR5643525 | five period of Gastrodia elata | 60.020 | |
| SRR5643528 | five period of Gastrodia elata | 69.710 | |
| SRR5643658 | five period of Gastrodia elata | 66.060 | |
| SRR5643659 | five period of Gastrodia elata | 90.090 | |
| SRR5643660 | five period of Gastrodia elata | 95.350 | |
| SRR5643661 | five period of Gastrodia elata | 94.180 | |
| SRR5643662 | five period of Gastrodia elata | 96.590 | |
| SRR5643663 | five period of Gastrodia elata | 96.420 | |
| SRR5643664 | five period of Gastrodia elata | 96.320 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 117.710 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 157.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 112.880 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 121.510 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 110.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 126.180 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 114.240 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 105.510 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 119.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 109.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 130.300 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 130.300 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 96.19 |
| Juven | Juvenile tuber | 136.60 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 82.01 | |
| Mother_Juven | Mother tuber of Juvenile | 114.82 |