Gene detail

Detail information of GWHGAAEX010889/evm.TU.scaffold_33.68

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|108804700\|ref\|YP_644637.1\|	7.00E-57	major facilitator transporter [Rubrobacter xylanophilus DSM 9941]
KOG	KOG0253	7.00E-155	Synaptic vesicle transporter SV2 (major facilitator superfamily)
nr	gi\|743804232\|ref\|XP_010927137.1\|	0	PREDICTED: organic cation/carnitine transporter 7 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q940M4\|OCT7_ARATH	2.00E-155	Organic cation/carnitine transporter 7
trEMBL	tr\|K4A922\|K4A922_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si035378m}
TAIR	AT3G13050	7.00E-155	Major facilitator superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000044	1866477	1896003	-

Transcript Sequence
>GWHTAAEX010889 ATCTAACGATGCCCGCAGCAGTGAACAGCTAGAAGGTTTAGCTCTATAACAAAAGCTTCAAATCCGCATCAGCGAGGGACGGAGGGACAAAAGTACAAAGAGGGACATACATATTAGAGAAAGCTGGCGAGCCTTGCTCTATTGGACGAAGGGTACAGTGTAGATGATGCACTCGTTTCTGTGGGATTCGGGAAGTTCCAAACCCTTGCGCTCTTATATTCTGGAGTGGCTTATGCTGCAGAAGCAATGGAAGTAATGATTCTGTCCTTTATCGGTCCGGCTGTTCAATCCGAGTGGAATCTTAATTCCCAAGAAAAGAGTCTTATTTCTAGTGCGGTCTTTGCTGGCATGCTTGTGGGAGCATACACTTGGGGTCTTGTTTCAGACAACTATGGAAGGAGGAAAGGTTTCCTCTTTACTGCACTAGTAACTAGCGGGGCTGGTTTTCTCAGTTCATTTTCCCCCAATTACATTTCTTTGGTCATTCTTCGGTTTTTTGTTGGTGCTGGATTGGGTGGCGGACCAGTTCTTTTCTCTTGGTTTCTTGAGTTTGTTCCAGCTCCCAGTAGAGGTTCGTGGATGGTCTTCTTTTCCTTTTTTTGGAGCTTAGGTACAGTCTTGGAAGCTTCTCTTGCGTGGGTGGTCATGCCAGCATTAGGCTGGCGGTGGTTGCTAGGACTATCCTCTTTGCCATCATTTTTATTACTTGTATTTTATAAAATCACCCCAGAATCACCTAGGTTTCTCTGCATGAAAGGGAGAAAGTTTGATGCAGTTCTTGTTCTTGAGAGAATAGCTAGACTTAATCAAAAAGTGCTTCCTTCAGGCGAACTTGCCTTGGATCATAAAGAGCTGGATAAGGTCAATGAAAATACTGATGATTTGCGAGCCACCCATGCAGAACAAGAGAGTAAGAGTGGAACATCTTTCATTGGTTGTCTTGCTTTCAAGTTTATCTGTACTGGCACGCTCTATAAGCTTTTATCAACGCAGCTTATAAGAACAACTCTTCTTCTATGGATGGCCTTTTTTGGAAATGTTTTTACTTATTATGGTGTGATTTTGCTGACCTCTGGGCTAAGCGATGAGGGGGGAAATTGCAAGACAGTAAGGATGCATATGTACTACAAAGAGGGCACCAATCTTTATAAAGATGTTTTCATCACTAGTATGGCTGAGGTTCCGGGGCTAATTTTATCAGGCGTGATTGTTGACAGAATTGGCCGAAAACTTTCAGTTGCGTCTATGATGTTTGCCACTTTTGCTTTCTTGGTTCCTTTAGTTTTTTATCAGAAAGAAGGTCTTACTACTGCACTGCTTTTCTGTGCTCGAATATGTATAACAGGAAGCATCACCACTCTTTCTATATATGCTCCAGAGATATATCCGACCTCAGTGAGGAGCACTGGCTATGGAACGGCAAACATGATGGGAAAAATTGGTGGAATTGTTTCTCCTCTTGTGGCTGTTGGACTGGTCGATGGGTGCCACCAAGGGGCAGCTGTTCTTCTCTTTGAAGCTCTGATCTTTTTTACAGGGATGGCTGTAATGTTTTTCCCTGTTGAAACCAAGGGCTGTAAGCTTAAAGATTCTCTATAGTTTCTTGCTAGTATGAAAAGTTCTGTTGTTGTAACAACTTCTTGAGCCTCCTTTATAATTGCAATGATAAGTGTTTCACAAATGTTTCGGTGCATATATACTACACATGTTAGATTTTTTAATGTGCATACACGTAATTTATTAT

Network for GWHGAAEX010889

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00083.23	Sugar_tr	23	447	1.50E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0022857	Molecular Function	transmembrane transporter activity
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	60.830
SRP064423	SRR2545915	Juvenile tuber	40.330
SRP108465	SRR5643513	five period of Gastrodia elata	60.920
	SRR5643514	five period of Gastrodia elata	35.070
	SRR5643515	five period of Gastrodia elata	24.540
	SRR5643524	five period of Gastrodia elata	24.250
	SRR5643525	five period of Gastrodia elata	22.330
	SRR5643528	five period of Gastrodia elata	14.720
	SRR5643658	five period of Gastrodia elata	22.190
	SRR5643659	five period of Gastrodia elata	14.240
	SRR5643660	five period of Gastrodia elata	15.940
	SRR5643661	five period of Gastrodia elata	15.200
	SRR5643662	five period of Gastrodia elata	16.780
	SRR5643663	five period of Gastrodia elata	21.930
	SRR5643664	five period of Gastrodia elata	19.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	51.240
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	55.820
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	40.840
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	59.400
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	71.580
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	90.700
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	55.260
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	65.340
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	40.980
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	36.340
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	56.210
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	56.210
SRP279888	Gastro	Gastrodia elata tuber	23.51
	Juven	Juvenile tuber	34.91
	Mother_Gastro	Mother tuber of Gastrodia elata	26.21
	Mother_Juven	Mother tuber of Juvenile	24.75