Detail information of GWHGAAEX010890/evm.TU.scaffold_33.69
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|312137112|ref|YP_004004449.1| | 3.00E-36 | 30S ribosomal protein S9 [Methanothermus fervidus DSM 2088] |
| KOG | KOG1753 | 1.00E-83 | 40S ribosomal protein S16 |
| nr | gi|695033021|ref|XP_009404058.1| | 1.53E-85 | PREDICTED: 40S ribosomal protein S16-like isoform X1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O22647|RS16_FRIAG | 2.00E-87 | 40S ribosomal protein S16 |
| trEMBL | tr|K4BW97|K4BW97_SOLLC | 1.00E-85 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc05g005690.1.1} |
| TAIR | AT2G09990 | 1.00E-83 | Ribosomal protein S5 domain 2-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000044 | 1937083 | 1938026 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010890
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00380.18 | Ribosomal_S9 | 14 | 146 | 2.90E-31 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02960 | RP-S16e, RPS16 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 89.560 |
| SRR2545915 | Juvenile tuber | 100.820 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 264.630 |
| SRR5643514 | five period of Gastrodia elata | 241.890 | |
| SRR5643515 | five period of Gastrodia elata | 236.930 | |
| SRR5643524 | five period of Gastrodia elata | 245.800 | |
| SRR5643525 | five period of Gastrodia elata | 146.080 | |
| SRR5643528 | five period of Gastrodia elata | 171.200 | |
| SRR5643658 | five period of Gastrodia elata | 127.210 | |
| SRR5643659 | five period of Gastrodia elata | 310.850 | |
| SRR5643660 | five period of Gastrodia elata | 305.000 | |
| SRR5643661 | five period of Gastrodia elata | 320.480 | |
| SRR5643662 | five period of Gastrodia elata | 258.050 | |
| SRR5643663 | five period of Gastrodia elata | 282.260 | |
| SRR5643664 | five period of Gastrodia elata | 260.510 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 202.770 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 219.760 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 232.570 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 167.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 164.780 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 147.190 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 198.030 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 175.520 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 273.320 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 257.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 334.580 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 334.580 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 326.63 |
| Juven | Juvenile tuber | 221.70 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 133.13 | |
| Mother_Juven | Mother tuber of Juvenile | 153.13 |