Detail information of GWHGAAEX010893/evm.TU.scaffold_33.73
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|296273514|ref|YP_003656145.1| | 4.00E-11 | RNP-1 like RNA-binding protein [Arcobacter nitrofigilis DSM 7299] |
| KOG | KOG0123 | 0 | Polyadenylate-binding protein (RRM superfamily) |
| nr | gi|719970147|ref|XP_010270536.1| | 0 | PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Nelumbo nucifera] |
| Swissprot | tr|P42731|PABP2_ARATH | 0 | Polyadenylate-binding protein 2 |
| trEMBL | tr|M0TWF6|M0TWF6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P00990_001} |
| TAIR | AT4G34110 | 0 | poly(A) binding protein 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000044 | 2033387 | 2063706 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010893
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.21 | RRM_1 | 33 | 103 | 9.10E-17 |
| PF00076.21 | RRM_1 | 121 | 188 | 1.80E-18 |
| PF00076.21 | RRM_1 | 212 | 280 | 7.80E-21 |
| PF00076.21 | RRM_1 | 315 | 383 | 9.70E-19 |
| PF00658.17 | PABP | 561 | 627 | 2.80E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13126 | PABPC | RNA transport | map03013 |
| mRNA surveillance pathway | map03015 | ||
| RNA degradation | map03018 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003723 | Molecular Function | RNA binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 561.630 |
| SRR2545915 | Juvenile tuber | 536.390 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 285.210 |
| SRR5643514 | five period of Gastrodia elata | 219.360 | |
| SRR5643515 | five period of Gastrodia elata | 258.050 | |
| SRR5643524 | five period of Gastrodia elata | 226.370 | |
| SRR5643525 | five period of Gastrodia elata | 302.850 | |
| SRR5643528 | five period of Gastrodia elata | 317.000 | |
| SRR5643658 | five period of Gastrodia elata | 251.350 | |
| SRR5643659 | five period of Gastrodia elata | 408.020 | |
| SRR5643660 | five period of Gastrodia elata | 421.990 | |
| SRR5643661 | five period of Gastrodia elata | 444.630 | |
| SRR5643662 | five period of Gastrodia elata | 396.730 | |
| SRR5643663 | five period of Gastrodia elata | 429.170 | |
| SRR5643664 | five period of Gastrodia elata | 441.110 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 364.380 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 338.010 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 314.830 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 366.200 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 352.560 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 379.240 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 297.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 319.210 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 289.790 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 280.430 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 337.620 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 337.620 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 529.39 |
| Juven | Juvenile tuber | 299.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 240.76 | |
| Mother_Juven | Mother tuber of Juvenile | 375.59 |