Detail information of GWHGAAEX010895/evm.TU.scaffold_33.76
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 3.00E-18 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|672138287|ref|XP_008792896.1| | 0 | PREDICTED: probable inactive receptor kinase At5g67200 [Phoenix dactylifera] |
| Swissprot | tr|Q93Y06|Y5720_ARATH | 0 | Probable inactive receptor kinase At5g67200 (Precursor) |
| trEMBL | tr|C0HEJ9|C0HEJ9_MAIZE | 0 | Uncharacterized protein {ECO:0000313|EMBL:ACN25452.1, ECO:0000313|EnsemblPlants:GRMZM2G055844_P01} |
| TAIR | AT5G43020 | 0 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000044 | 2133547 | 2144957 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010895
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 35 | 77 | 6.20E-05 |
| PF13855.5 | LRR_8 | 106 | 164 | 2.70E-07 |
| PF00069.24 | Pkinase | 393 | 625 | 2.00E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-III |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.470 |
| SRR2545915 | Juvenile tuber | 6.670 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.960 |
| SRR5643514 | five period of Gastrodia elata | 16.210 | |
| SRR5643515 | five period of Gastrodia elata | 11.450 | |
| SRR5643524 | five period of Gastrodia elata | 12.290 | |
| SRR5643525 | five period of Gastrodia elata | 4.010 | |
| SRR5643528 | five period of Gastrodia elata | 2.920 | |
| SRR5643658 | five period of Gastrodia elata | 5.190 | |
| SRR5643659 | five period of Gastrodia elata | 9.210 | |
| SRR5643660 | five period of Gastrodia elata | 6.890 | |
| SRR5643661 | five period of Gastrodia elata | 9.390 | |
| SRR5643662 | five period of Gastrodia elata | 8.020 | |
| SRR5643663 | five period of Gastrodia elata | 9.620 | |
| SRR5643664 | five period of Gastrodia elata | 7.190 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.100 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.700 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.210 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.480 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.240 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.440 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.070 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.570 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.590 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.590 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.62 |
| Juven | Juvenile tuber | 5.57 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.47 | |
| Mother_Juven | Mother tuber of Juvenile | 1.78 |